Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10j18
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz...    30   0.34 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    30   0.44 
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    28   1.4  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.5  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    26   7.2  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   9.6  

>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
           Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -3

Query: 790 SLYDASFKHYKRQGMSDKDAANTANKLLRIVQEKFDKMSWDEVDRLCYDCLLDE 629
           +LY+ S+KH     M      N  +  L IV  +F  MS     RL Y  L DE
Sbjct: 29  TLYNDSYKHSHHIAMKGVPDTNETHFRLEIVSPEFSGMSRVARHRLVYGLLKDE 82


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 676 SWDEVDRLCYDCLLDERGIRRPAYIENDIEIDDMFN 569
           S++E++R      L    IR P   END+++D++FN
Sbjct: 253 SFEEIERARQRFALLGDNIREPQEEENDVDVDEIFN 288


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 623 TSFVQQAVIAKSVNFIPGHFIKLLLNNPQ 709
           T+ +      + V F PGHFI+ +L++PQ
Sbjct: 304 TNILNHMTRLRIVPFAPGHFIEYILSHPQ 332


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 119 NKLFLLQTILLTYSLKMKIIKLMRLSFIIYCNN 217
           N++FLL+ I+  Y + M I   + + FI+  +N
Sbjct: 411 NRIFLLERIMNRYGIPMTIDTFLLMQFILAKSN 443


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 366 YFTADSMP*FNDLLQFNLCDCNLI*NIIRETKLF 265
           Y+   S+P   DLL+ N+ + + I NII+  ++F
Sbjct: 7   YYMEQSVPELEDLLEKNIFNRDEINNIIKTRRVF 40


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 799 KPESLYDASFKHYKRQGMSDKDAANTANKLLRIVQEKFDKMSWD 668
           +PE   D S  H KR  +SD+ +  T+++ + ++    D++  D
Sbjct: 20  EPEQSADFSASHKKRGPVSDRSSRRTSSEEVDLMPNVDDEVDGD 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,219
Number of Sequences: 5004
Number of extensions: 51957
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)