Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10j18
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    29   3.9  

>Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical
           protein T28C6.7 protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = -3

Query: 736 DAANTANKLLRIVQEKFDKMSWDEVD 659
           + A+  N+ +RIVQ+KF++M+ D+ D
Sbjct: 58  EVASVKNQAMRIVQQKFEEMNRDKKD 83


>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
            protein C56C10.12 protein.
          Length = 1599

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
 Frame = +2

Query: 614  SPYTSFVQQAVIAKSVNFIPGHFIKLL-------LNNPQKFVCSICSILV 742
            SP+ S+V   V  KS N   GHF + L       L+N  K   S CSI V
Sbjct: 1118 SPFASYVMLRVEQKSFNTFYGHFFETLTKKDKYTLDNAVKKASSKCSITV 1167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,085,317
Number of Sequences: 27780
Number of extensions: 285334
Number of successful extensions: 578
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)