Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10j18
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.7  

>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 298 NIEYN*GDKIIYFI*LMILKSYCF 227
           N +YN  +K+IYFI  + L +Y F
Sbjct: 211 NHDYNLENKLIYFIEDIGLNTYYF 234


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 479 NHTFLLTSCRKSFKYLAFSSH*NISEILCLSIVYCYILI 363
           ++T L++  +K + +   S     S  LC+S+VY  +LI
Sbjct: 376 DNTSLVSLDKKQYTWRHTSVLIGWSAFLCISLVYIIMLI 414


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 764 LQKTRHVRQGCCKYC 720
           + K RHV   CC +C
Sbjct: 1   MTKGRHVVMSCCCWC 15


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 758 KTRHVRQGCC 729
           KTRH   GCC
Sbjct: 821 KTRHQNTGCC 830


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,040
Number of Sequences: 438
Number of extensions: 3861
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)