Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10j17
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    28   0.46 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   0.81 
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    26   1.9  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    26   2.5  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.3  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   3.3  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    25   4.3  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   5.7  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    24   7.6  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    24   10.0 
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    24   10.0 
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    24   10.0 
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    24   10.0 

>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 289 QRREMYKFRRHILCSKIHKWYNDFKVKYPDLWKISE 182
           +RR +Y   +   C+   KWY D   ++ D W I +
Sbjct: 436 ERRVIYLSLQEEYCTLKRKWYEDIHKQFNDRWFIEQ 471


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.5 bits (58), Expect = 0.81
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 74   KYSNLIFDFSDRVYRMVEVSQVWRVSGKMLDLFHG 178
            KY+   F  +D   R + V    R+SG +L L HG
Sbjct: 2527 KYTTSSFFLTDDFVRFIRVCFHSRISGNLLTLLHG 2561


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 38  VWSSSXCVRKYEKYSNLIFDFSDRVYRM 121
           VW+ S    + E + NLIF+ +  +YR+
Sbjct: 84  VWTLSSSSNERESFENLIFEHACLIYRL 111


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 247 SKIHKWYNDFKVKYPDLWKISESAMKEIQHFAAN 146
           S + ++YN + + Y + W  ++   K +Q   AN
Sbjct: 260 SLLIQYYNSYLLPYEEAWLAAQQQQKSLQQAKAN 293


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 269 FIHFSSLLGKQKCKSYRRYLTI**YIFMYLPSCIWKSQNL 388
           F  + S +GK+ CK + R+L    +       CIW   NL
Sbjct: 77  FESYHSKVGKKSCKRFMRWLKANAFAEERDIDCIWYQLNL 116


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 196 WKISESAMKEIQHFAANPPDLTHLNHP 116
           + I  S  K++ HF  + P  TH  HP
Sbjct: 879 YTIGTSNAKDVSHFVFSCPYYTHFCHP 905


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 14  IWYLSKNLVWSSSXCVRKYEKYSNLIFDF 100
           + YLS   ++SSS C+  YE   N+ ++F
Sbjct: 264 VLYLSIKGLFSSSTCLELYELIRNISWNF 292


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 2   NNIIIWYLSKNLVWSSSXCVRKYEKYSNLIFDFSDR 109
           NN++I+Y++    +S   C  K     NL+     R
Sbjct: 238 NNVVIYYMNSTKSYSVVVCFVKVYTIENLVDQIKSR 273


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 209 LHLKIIVPFVYLRT*NMTTKFIHFSSLLGKQKCKSYRRYLTI**YIFMYLPSCIWKS 379
           L L +I+P  + R  + T KF   +    +Q C  +    T     + +L   IWKS
Sbjct: 165 LFLLVIIPLFFPRAWSPTVKFSKVARPSPEQTCSIFSLIFT-----YGWLNGIIWKS 216


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 190 ISESAMKEIQHFAANPPDLTHLNHPIHP 107
           I E+  +   HF   P  +THL  PI P
Sbjct: 24  IFEAIFEVFLHFLKIPVYMTHLGFPITP 51


>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 135 KSGGLAAKCWISFMALSEIF 194
           +S  +A KCW+ F+  S+ F
Sbjct: 71  RSSKVATKCWVDFVENSDQF 90


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
          Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 2  NNIIIWYLSKNLVWSSSXCVR--KYEKYSNL 88
          N I +W L K L   S+ CVR  K+ K  +L
Sbjct: 7  NTIGVWRLGKTLGTGSTSCVRLAKHAKTGDL 37


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 188 NFP*IWILHLKIIVPFVYLRT*NMTTKFIHF 280
           NF  IWILH+ +   F    +  + T   H+
Sbjct: 423 NFSRIWILHISVFWYFTVYNSPTIYTPNFHY 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,327
Number of Sequences: 5004
Number of extensions: 36916
Number of successful extensions: 106
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)