Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10j17
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545... 32 0.19
10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076 29 1.0
01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553 29 1.0
03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835 28 2.4
01_06_1831 + 40198371-40198625,40199614-40200141 28 3.1
03_02_0277 + 7056341-7056391,7056681-7056764,7057107-7057223,705... 27 4.1
03_02_0821 - 11519840-11519989,11520333-11520476,11520556-115207... 27 5.5
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 26 9.5
06_02_0366 - 15202400-15202413,15202888-15202979,15203101-152031... 26 9.5
01_06_1833 + 40208360-40208587,40208677-40209024,40209101-40209676 26 9.5
01_06_1829 + 40186268-40186492,40186599-40186988,40187495-40187980 26 9.5
>02_05_0941 +
32953065-32953089,32954252-32954406,32954486-32954587,
32955089-32955140,32955237-32955349,32955542-32955610,
32955942-32956049,32956517-32956661,32957245-32957476,
32957567-32957853,32957951-32958087,32958520-32958667,
32959464-32959595,32960239-32960367,32960707-32960834,
32960911-32961075,32961462-32961587,32962088-32962161,
32962285-32962534,32962875-32963054,32963128-32963361,
32964771-32964840,32965065-32965177,32965403-32965511,
32965639-32965688,32965823-32965889,32966131-32966203,
32966393-32966448,32966729-32966831,32967377-32967458,
32967717-32967779,32967918-32967977,32968356-32968448,
32968561-32968623,32968699-32968797
Length = 1363
Score = 31.9 bits (69), Expect = 0.19
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = -1
Query: 289 QRREMYKFRR---HILCSKIHKWYNDFKVKYPDLWKISESAMKEIQHFAANPPDLTHLNH 119
Q +MY+ R L S +H W + V+Y DL KI + A+ ++++ + D ++ N+
Sbjct: 686 QMSDMYRKLRGTMRFLLSNLHDWKPENSVRYSDLPKIDKYALFQLENVVTSMKD-SYENY 744
Query: 118 PIHPIRKI 95
+ I +I
Sbjct: 745 QFYKIYQI 752
>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
Length = 748
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +2
Query: 20 YLSKNLVWSSSXCVRKYEKYSNLIFDFSDRVYRMVEVSQVWRVSGKMLDLFHGAFRNF 193
Y ++N C+ + + YSN S++ + +V V +W + K ++FHG +F
Sbjct: 247 YCNENEQKHLHLCIAEPDDYSN---SDSNKEWPLVTVKTIWEMREKHKNIFHGKIGDF 301
>01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553
Length = 362
Score = 29.5 bits (63), Expect = 1.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 104 DRVYRMVEVSQVWRVSGKMLDLFHGAFRN 190
DR + V++ W G +LDL+ +F+N
Sbjct: 87 DRTVIITSVNEAWAAPGSLLDLYRDSFKN 115
>03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835
Length = 379
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 104 DRVYRMVEVSQVWRVSGKMLDLFHGAFR 187
DR M +++ W G +LDLF +FR
Sbjct: 113 DRTVIMTQINLAWTKPGSLLDLFFESFR 140
>01_06_1831 + 40198371-40198625,40199614-40200141
Length = 260
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 104 DRVYRMVEVSQVWRVSGKMLDLFHGAFRN 190
D+ + V+ W G +LDLF +F N
Sbjct: 102 DKTVIITSVNDAWAAPGSLLDLFRDSFHN 130
>03_02_0277 +
7056341-7056391,7056681-7056764,7057107-7057223,
7057335-7057772,7057889-7058295,7058371-7058470,
7058707-7058793,7059056-7059544
Length = 590
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -1
Query: 307 TFLFA*QRREMYKFRRHILCSKIHKWYNDFKVKYPDLWKISESAMKEIQHFAANPPD-LT 131
++L + QR HILC ++H ++ WK E +++Q FA + P+ L
Sbjct: 401 SYLISGQRVNPELIEYHILCCRVHSPTQWLRLLLYPKWKSKEK--EDLQGFAVDRPEPLV 458
Query: 130 H 128
H
Sbjct: 459 H 459
>03_02_0821 -
11519840-11519989,11520333-11520476,11520556-11520754,
11521309-11521412,11521488-11521598,11521653-11521771,
11521858-11522002,11522516-11522568,11522676-11522721,
11522818-11522963,11523691-11523760,11524930-11525083,
11525186-11525307,11525612-11525835,11526317-11526371,
11526793-11526972
Length = 673
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 244 KIHKWYNDFKVKYPDLWKISESAMKEIQHFAANPPDL 134
K K+Y+ K YPD+ IS + I A NP DL
Sbjct: 400 KYVKFYSAIKASYPDIKIISSCDISSIS--AVNPADL 434
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 77 YSNLIFDFSDRVYRMVEVSQVWRVSGKMLDLFHG 178
+++L+FD D Y EV + GK+ D FHG
Sbjct: 579 FNHLVFD--DCFYHHYEVHLFESICGKIADKFHG 610
>06_02_0366 -
15202400-15202413,15202888-15202979,15203101-15203171,
15203275-15203334,15203582-15203685,15203746-15203800
Length = 131
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 238 HKWYNDFKVKYPD-LWKISESAMKEIQHFAANPPDLTHLN 122
HK+Y DFK+ D +W+ + + +I PD + N
Sbjct: 7 HKYYADFKMDLEDFMWRFTVRLIPQISFSQYTYPDSDYQN 46
>01_06_1833 + 40208360-40208587,40208677-40209024,40209101-40209676
Length = 383
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 104 DRVYRMVEVSQVWRVSGKMLDLFHGAFR 187
DR M V++ W G ++D F +FR
Sbjct: 97 DRTVIMTSVNEAWAAPGSLMDSFLESFR 124
>01_06_1829 + 40186268-40186492,40186599-40186988,40187495-40187980
Length = 366
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 119 MVEVSQVWRVSGKMLDLFHGAFR 187
M V++ W G +LDLF FR
Sbjct: 106 MTSVNEAWAAPGSLLDLFLEGFR 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,286,488
Number of Sequences: 37544
Number of extensions: 201160
Number of successful extensions: 461
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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