Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10j17
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-3|CAB54483.1|  493|Caenorhabditis elegans Hypothetical ...    29   0.93 
U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribo...    28   2.8  
AC024200-15|AAF36011.1|  945|Caenorhabditis elegans Poly(adp-rib...    28   2.8  
Z68161-9|CAA92298.2|  688|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z78060-5|CAB01492.1|  216|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AL022271-2|CAA18350.1|  216|Caenorhabditis elegans Hypothetical ...    27   6.5  

>AL110500-3|CAB54483.1|  493|Caenorhabditis elegans Hypothetical
           protein Y87G2A.3 protein.
          Length = 493

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = +2

Query: 20  YLSKNLVWSSSXCVRKYEKYSNLIFDFSDRVYRMVEVSQVWRVSGKMLDLFHG 178
           ++ ++  W        YEK   + FD  D +Y + +++Q+    GK +  + G
Sbjct: 102 HIGRHFEWDIEKTSEIYEKILQMFFDEKDALYSIHQIAQMGVTEGKEVSKWFG 154


>U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical
           protein C12D5.2 protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -1

Query: 313 TFTFLFA*QRREMYKFRRHIL--CSKIHKWYNDFKVKYPDL 197
           TF F      ++     RH++  CS +H  Y   K KY DL
Sbjct: 209 TFPFFLKLDTKDQLILMRHVVVGCSNLHSAYYTLKNKYEDL 249


>AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-1 protein.
          Length = 945

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 196 WKISESAMKEIQHF-AANPPDLTHL 125
           W+  E   +EIQHF  A+PP LT L
Sbjct: 82  WEDQEKLRQEIQHFKTASPPTLTPL 106


>AC024200-15|AAF36011.1|  945|Caenorhabditis elegans
           Poly(adp-ribose) metabolism enzymeprotein 1 protein.
          Length = 945

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 196 WKISESAMKEIQHF-AANPPDLTHL 125
           W+  E   +EIQHF  A+PP LT L
Sbjct: 82  WEDQEKLRQEIQHFKTASPPTLTPL 106


>Z68161-9|CAA92298.2|  688|Caenorhabditis elegans Hypothetical
           protein F20C5.5 protein.
          Length = 688

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 2   NNIIIWYLSKNLVWSSSXCVRKYEKYSNLIFDFSDRVYRM 121
           N  +I  L+  L W +  C  K     N IFD +D + ++
Sbjct: 420 NENMIKMLADELSWKTKDCQVKVSALENQIFDKNDEIVKL 459


>Z78060-5|CAB01492.1|  216|Caenorhabditis elegans Hypothetical
           protein C34D1.5 protein.
          Length = 216

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -3

Query: 134 DSPQPSYTPYPKNQKLNWNIF 72
           D   PS  P PK QKLN NIF
Sbjct: 14  DYDLPSDEPSPKYQKLNKNIF 34


>AL022271-2|CAA18350.1|  216|Caenorhabditis elegans Hypothetical
           protein C34D1.5 protein.
          Length = 216

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -3

Query: 134 DSPQPSYTPYPKNQKLNWNIF 72
           D   PS  P PK QKLN NIF
Sbjct: 14  DYDLPSDEPSPKYQKLNKNIF 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,453,830
Number of Sequences: 27780
Number of extensions: 198714
Number of successful extensions: 468
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)