Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10j14
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    29   0.057
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   5.0  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   6.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.6  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   6.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.7  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 29.1 bits (62), Expect = 0.057
 Identities = 11/48 (22%), Positives = 28/48 (58%)
 Frame = -1

Query: 389 NMENQAKIVALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQR 246
           N + + ++  +    + ++ HSD+VTS+ +Q  ++  + ++Q Q+  R
Sbjct: 62  NEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQQSR 109


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 25/104 (24%), Positives = 43/104 (41%)
 Frame = -1

Query: 533 KPNAVVTCKFYKKTQERVPAVQQYKNIIKVLQERSVISVENSDNNCDINMENQAKIVALE 354
           +P+  V      K    +P +Q   NI+  + E+ +I  +    +         ++VALE
Sbjct: 299 RPDENVVTDKKSKVNFALPELQHNLNILVDMCEQDIIQNDRRTRHLS------DRVVALE 352

Query: 353 AELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTLAPQ 222
           AE KN      +V  ++ QLI+    +   V  L  +   L  Q
Sbjct: 353 AEKKN----LSKVIDQHSQLIDTLENVLAIVDRLMDETNQLTLQ 392


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 374 AKIVALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVR 237
           A +V   A +K E +H+D+V      ++E  T L ++   L  Q+R
Sbjct: 474 AYMVVSGAPVK-ENDHADRVCDMALDMVEAITDLKDRSTGLHLQIR 518


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 764 AELKKEPVINFKFECSVCFETYSQQSNDTCPFLI 663
           AELK+      + ECS C E   + ++    FLI
Sbjct: 61  AELKRNLPDALENECSPCSEKQKKIADKVVQFLI 94


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +2

Query: 347 IQLPKQLFLPDSPYLCHNCCRCFRH 421
           + + +++   + PY C  C R F H
Sbjct: 135 LSVHRRIHTKERPYKCDVCERAFEH 159



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 798 EPVLTLPSTHLIAPLQSVFQLSVEI 872
           +P+LT PS++ ++P+ S   L + I
Sbjct: 432 DPILTPPSSNPVSPVPSPDPLDLAI 456


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 764 AELKKEPVINFKFECSVCFETYSQQSNDTCPFLI 663
           AELK+      + ECS C E   + ++    FLI
Sbjct: 61  AELKRNLPDALENECSPCSEKQKKIADKVVQFLI 94


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 448 LIMFLYCCTAGTLS*VF 498
           L +F   CTAGTL  +F
Sbjct: 486 LWVFTLACTAGTLGIIF 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,686
Number of Sequences: 438
Number of extensions: 4533
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)