Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10j12
(292 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-2|CAB54440.1| 91|Caenorhabditis elegans Hypothetical ... 134 8e-33
Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical pr... 33 0.045
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 28 0.97
AF039048-9|AAB94233.1| 362|Caenorhabditis elegans Hypothetical ... 27 3.0
AF039048-8|AAT68896.1| 367|Caenorhabditis elegans Hypothetical ... 27 3.0
AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical ... 27 3.0
Z72507-1|CAA96633.2| 172|Caenorhabditis elegans Hypothetical pr... 26 3.9
AL032639-10|CAA21634.1| 108|Caenorhabditis elegans Hypothetical... 26 5.2
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 26 5.2
Z71266-9|CAD24483.1| 489|Caenorhabditis elegans Hypothetical pr... 25 6.8
AB040992-1|BAB21560.1| 489|Caenorhabditis elegans CeCRMP/DHP-1 ... 25 6.8
Z81115-4|CAB03294.2| 651|Caenorhabditis elegans Hypothetical pr... 25 9.1
Z75532-3|CAA99810.1| 660|Caenorhabditis elegans Hypothetical pr... 25 9.1
Z50027-7|CAA90332.3| 460|Caenorhabditis elegans Hypothetical pr... 25 9.1
AC006614-2|AAF39763.1| 254|Caenorhabditis elegans Drosophila od... 25 9.1
>AL110490-2|CAB54440.1| 91|Caenorhabditis elegans Hypothetical
protein Y48B6A.2 protein.
Length = 91
Score = 134 bits (325), Expect = 8e-33
Identities = 57/81 (70%), Positives = 68/81 (83%)
Frame = -3
Query: 245 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 66
MAKRTKKVGI GKYGTRYGASLRKM KK+EV QH++YTCSFCGK+AMKR GIW+C +C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKC 60
Query: 65 KRTVAGGAWVFSTTAASSCRS 3
+ VAGGA+V+ T A++ RS
Sbjct: 61 HKVVAGGAYVYGTVTAATVRS 81
>Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical
protein T13H5.4 protein.
Length = 500
Score = 32.7 bits (71), Expect = 0.045
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 282 FSVNFCIGEVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLLILW 118
+S C + Y+ + +QK +N W+ H +RCL N +N T+ L LW
Sbjct: 405 YSCEICGNQTYKGPKAFQKHFNEWRHSHGMRCLGIPN-TSHFANITKIKDALDLW 458
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 28.3 bits (60), Expect = 0.97
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 149 QHAKYTCSFCGKDAMKRSCVGIWSCKRC 66
++ KY C+ C R G+WSCK C
Sbjct: 229 ENNKYECAICYTRITTRQ--GVWSCKTC 254
>AF039048-9|AAB94233.1| 362|Caenorhabditis elegans Hypothetical
protein F16B4.2a protein.
Length = 362
Score = 26.6 bits (56), Expect = 3.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 104 KRSCVGIWSCKRCKRTVAGGAWVFSTT 24
K C+ W+C C +T+ +W F +T
Sbjct: 333 KEKCILDWTCSTCDKTIE--SWYFRST 357
>AF039048-8|AAT68896.1| 367|Caenorhabditis elegans Hypothetical
protein F16B4.2b protein.
Length = 367
Score = 26.6 bits (56), Expect = 3.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 104 KRSCVGIWSCKRCKRTVAGGAWVFSTT 24
K C+ W+C C +T+ +W F +T
Sbjct: 338 KEKCILDWTCSTCDKTIE--SWYFRST 362
>AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical
protein C15F1.5a protein.
Length = 381
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -3
Query: 182 LRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFST 27
L+K KKM V A S + M +C G + C+R + G A + T
Sbjct: 32 LKKSTKKMRVCPVAHCYSSLTAPEPMTSTCEG----ENCQRKIMGNAEILRT 79
>Z72507-1|CAA96633.2| 172|Caenorhabditis elegans Hypothetical
protein F17C11.1 protein.
Length = 172
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 122 CGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRS 3
CGK + R+C + +C W F+TTAA++ S
Sbjct: 69 CGKSPVNRNCTALVPDSKCV-----FKWAFATTAAATACS 103
>AL032639-10|CAA21634.1| 108|Caenorhabditis elegans Hypothetical
protein Y38F1A.9 protein.
Length = 108
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 203 GTRYGASLRKMVKKMEVTQHAK 138
G RY + ++KMV K VT H K
Sbjct: 46 GDRYVSKIKKMVGKFTVTLHIK 67
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 134 TCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 9
TC CG++ KR C+ + C G A S A+S C
Sbjct: 1119 TCGSCGQETRKRKCLSLQYGCAC----TGNATDTSVCASSVC 1156
>Z71266-9|CAD24483.1| 489|Caenorhabditis elegans Hypothetical
protein R06C7.3 protein.
Length = 489
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -2
Query: 276 VNFCIGEVYQNGQTYQKGWNYWQIW 202
++FC + ++NG++ G+N W+ W
Sbjct: 93 IDFCCPD-HRNGESLIAGYNRWRSW 116
>AB040992-1|BAB21560.1| 489|Caenorhabditis elegans CeCRMP/DHP-1
protein.
Length = 489
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -2
Query: 276 VNFCIGEVYQNGQTYQKGWNYWQIW 202
++FC + ++NG++ G+N W+ W
Sbjct: 93 IDFCCPD-HRNGESLIAGYNRWRSW 116
>Z81115-4|CAB03294.2| 651|Caenorhabditis elegans Hypothetical
protein T05D4.4 protein.
Length = 651
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 50 LLQSSCIAYKTRCRHKNVS 106
+++ C +YKT C+HK V+
Sbjct: 125 VIKKFCPSYKTACKHKAVT 143
>Z75532-3|CAA99810.1| 660|Caenorhabditis elegans Hypothetical
protein C54G10.3 protein.
Length = 660
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 128 SFCGKDAMKRSCVGIWSCKRCK 63
S CGK ++ R G+W C K
Sbjct: 459 SGCGKSSLLRMFAGLWHCSSGK 480
>Z50027-7|CAA90332.3| 460|Caenorhabditis elegans Hypothetical
protein C39B10.2a protein.
Length = 460
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 263 SERFTKMAKRTKKVGITGKYG 201
SE+F MAK+ + V +TG+ G
Sbjct: 332 SEKFDSMAKKMQSVVLTGRRG 352
>AC006614-2|AAF39763.1| 254|Caenorhabditis elegans Drosophila
odd-skipped-like protein2 protein.
Length = 254
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = -3
Query: 257 RFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGK 114
R T A R KK I + S ++ + T Y+C CGK
Sbjct: 112 RTTGRAARPKKEFICKYCDRHFTKSYNLLIHERTHTDERPYSCDVCGK 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,651,867
Number of Sequences: 27780
Number of extensions: 159599
Number of successful extensions: 484
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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