Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10j10
(286 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF101316-1|AAC69231.1| 684|Caenorhabditis elegans Hypothetical ... 28 0.94
Z92804-5|CAD89722.2| 320|Caenorhabditis elegans Hypothetical pr... 27 2.2
U41510-7|AAK39381.2| 76|Caenorhabditis elegans Hypothetical pr... 26 3.8
Z48009-9|CAA88085.1| 329|Caenorhabditis elegans Hypothetical pr... 26 5.0
AL008866-1|CAA15509.3| 724|Caenorhabditis elegans Hypothetical ... 26 5.0
Z69793-8|CAA93674.2| 354|Caenorhabditis elegans Hypothetical pr... 25 6.6
U80029-18|AAB37597.2| 330|Caenorhabditis elegans Serpentine rec... 25 6.6
U53154-7|AAC25857.1| 356|Caenorhabditis elegans Nuclear hormone... 25 6.6
AL008867-3|CAC14271.1| 354|Caenorhabditis elegans Hypothetical ... 25 6.6
AF273783-1|AAG15132.1| 358|Caenorhabditis elegans nuclear recep... 25 6.6
>AF101316-1|AAC69231.1| 684|Caenorhabditis elegans Hypothetical
protein F52F10.3 protein.
Length = 684
Score = 28.3 bits (60), Expect = 0.94
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 136 KKSLFIYYLLTYKIWYTSVQIVSVQRH 56
+K++FI +LT+ +W + I+SV+ H
Sbjct: 207 EKNIFIKIILTFSLWTNAELILSVKEH 233
>Z92804-5|CAD89722.2| 320|Caenorhabditis elegans Hypothetical
protein K05D4.8 protein.
Length = 320
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -1
Query: 130 SLFIYYLLTYKIWYTSVQIVSVQRHCHVIKHI-CSFIVII-FKFI 2
S Y L IW TS + S Q H + HI C F++II KFI
Sbjct: 196 SALAYIPLILNIWKTSKHLKSAQLH-KLQNHIMCQFLLIIASKFI 239
>U41510-7|AAK39381.2| 76|Caenorhabditis elegans Hypothetical
protein ZC449.4 protein.
Length = 76
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 265 TLVYTKNEAAQQVLLENNFTAIN 197
++VY K E AQ+ L NNF IN
Sbjct: 52 SMVYIKKEKAQERLPINNFAPIN 74
>Z48009-9|CAA88085.1| 329|Caenorhabditis elegans Hypothetical
protein AH6.12 protein.
Length = 329
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -1
Query: 127 LFIYYLLTYKIWYTSVQIVSVQRHCHVIKHICSFIVI 17
L I+Y Y+I Y+ +V + +H + + +CS +++
Sbjct: 61 LNIFYANLYQIVYSIDVVVILYKHFFMQEEVCSLLIL 97
>AL008866-1|CAA15509.3| 724|Caenorhabditis elegans Hypothetical
protein B0019.1 protein.
Length = 724
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -2
Query: 282 CANPTALWCTRKTRQLS-KFYWKITLPLLMLTKPPISKTINHT 157
C N T TRK RQLS + W TL ++ P + +T
Sbjct: 131 CGNNTVFQQTRKKRQLSLQQQWSTTLFTDLINSPETLGNLTNT 173
>Z69793-8|CAA93674.2| 354|Caenorhabditis elegans Hypothetical
protein R03A10.6 protein.
Length = 354
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 53 TMALNRNDLNTSVPNFVC**IIYK*TFFVLLIH 151
T++ +NDL T +P+F C I Y F + H
Sbjct: 90 TLSGYKNDLQTGLPSFWCDMIPYMAAFLPSIFH 122
>U80029-18|AAB37597.2| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 20 protein.
Length = 330
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 262 LVYTKNEAAQQVLLENNF-TAINADQTAYLKNYK 164
++ K + + +V LE + T + ADQ+ Y +N+K
Sbjct: 293 VILFKRDRSSRVKLEKSLETHVQADQSIYFENFK 326
>U53154-7|AAC25857.1| 356|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 42 protein.
Length = 356
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 137 VLLIHFSV*FIVFEIGGLVSINS 205
+L +HF V FI+FE GG S NS
Sbjct: 178 LLCVHFMVPFILFE-GGYKSTNS 199
>AL008867-3|CAC14271.1| 354|Caenorhabditis elegans Hypothetical
protein R03A10.6 protein.
Length = 354
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 53 TMALNRNDLNTSVPNFVC**IIYK*TFFVLLIH 151
T++ +NDL T +P+F C I Y F + H
Sbjct: 90 TLSGYKNDLQTGLPSFWCDMIPYMAAFLPSIFH 122
>AF273783-1|AAG15132.1| 358|Caenorhabditis elegans nuclear receptor
NHR-42 protein.
Length = 358
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 137 VLLIHFSV*FIVFEIGGLVSINS 205
+L +HF V FI+FE GG S NS
Sbjct: 180 LLCVHFMVPFILFE-GGYKSTNS 201
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,878,115
Number of Sequences: 27780
Number of extensions: 101129
Number of successful extensions: 232
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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