Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10j10
         (286 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   3.9  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          19   9.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   9.0  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 222 WKITLPLLMLTKPPISKT 169
           WK  +P+ + T P  SKT
Sbjct: 206 WKDGIPVTLTTVPKHSKT 223


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 52  DNGVEQKRFE 81
           +N +E+KRFE
Sbjct: 103 NNAIEEKRFE 112


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 5/13 (38%), Positives = 7/13 (53%)
 Frame = -1

Query: 64  QRHCHVIKHICSF 26
           + HC  + H C F
Sbjct: 740 EAHCFALCHCCDF 752


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,028
Number of Sequences: 438
Number of extensions: 1542
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)