Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10j05
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...    29   1.3  
AC006712-4|ABD63214.1|  166|Caenorhabditis elegans Hypothetical ...    28   2.3  
AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical ...    27   5.4  
AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine r...    27   7.1  

>Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical
           protein T21B10.4 protein.
          Length = 418

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = -1

Query: 316 NVTLCTYTAMLVGYMATFNEFEYLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMK 137
           NV +      ++ +M     + Y+ YW   +F   VA+    L T F+T EA   V + +
Sbjct: 344 NVVMWLLVVCIIMFMIIMLLYVYI-YWLRSTF---VAIEERALPTEFET-EASLFVAKQR 398

Query: 136 LFQAMYFSNVLLNYVV 89
            FQ+ Y+   LL+  V
Sbjct: 399 SFQSAYYDPALLDVSV 414


>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 272 HVSHQHGRVGAQR-HVNVRQRSIGKLHFCVGR 364
           HVSH HGR+G  R H   R  + G+ H  + R
Sbjct: 14  HVSHGHGRIGKHRKHPGGRGNAGGQHHHRINR 45


>AC006712-4|ABD63214.1|  166|Caenorhabditis elegans Hypothetical
           protein Y119C1B.12 protein.
          Length = 166

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = -1

Query: 370 RLSTDTKVKFPYAALSYINVTLCTYTAMLVGYMATF------NEFEYLQYW 236
           R+ T+T + +    L+   V L  + A+++GY+  F      N+ + L YW
Sbjct: 88  RIRTETDINYTVFNLALTIVRLAMFVAIIIGYVFVFSAYSKNNQCDQLLYW 138


>AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical
           protein F14F4.1 protein.
          Length = 398

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -1

Query: 154 VVYEMKLFQAMYFSNVLLNYVVFSDNQMGTNFVXXNNL--IHCCVLFMIF 11
           VVY+  +       N+ L +V+F  NQ+    V    L  IH CV  ++F
Sbjct: 24  VVYQTAVMIVSLLGNLFLLFVIFRANQVMKRRVSPVQLLIIHTCVADLLF 73


>AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 57 protein.
          Length = 280

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 87  NTT*FNSTLLKYMAWNSFIS*TTSWASVVLNAVHKVGAFSATDIKNDNRNQYCKY 251
           +TT F   L+ Y+ W S +  T     V    + +V AF +    + +RN+   Y
Sbjct: 72  STTMFVKNLIFYLIWLSLVMGTIKTTIVFFITIDRVFAFFSPIFYHKHRNKISMY 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,979,567
Number of Sequences: 27780
Number of extensions: 201483
Number of successful extensions: 476
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)