Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10j05
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   4.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   4.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   4.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   5.5  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   7.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   9.6  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    20   9.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 40  LNCXXKQNLYPFDCP 84
           L+C  + N++PFD P
Sbjct: 184 LSCQGRLNIFPFDDP 198


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 40  LNCXXKQNLYPFDCP 84
           L+C  + N++PFD P
Sbjct: 184 LSCQGRLNIFPFDDP 198


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 40  LNCXXKQNLYPFDCP 84
           L+C  + N++PFD P
Sbjct: 235 LSCQGRLNIFPFDDP 249


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 40  LNCXXKQNLYPFDCP 84
           L+C  + N++PFD P
Sbjct: 184 LSCQGRLNIFPFDDP 198


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 250 YLQYWFLLSFLMSVALN 200
           YL+ WF L  + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 250 YLQYWFLLSFLMSVALN 200
           YL+ WF L  + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 250 YLQYWFLLSFLMSVALN 200
           YL+ WF L  + S+ L+
Sbjct: 164 YLRTWFFLDLISSIPLD 180


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 40  LNCXXKQNLYPFDCPKTP 93
           LNC  +   +PFD  + P
Sbjct: 140 LNCGLRLEKFPFDVQECP 157


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 222 NDNRNQYCKYSNSLN 266
           N+N N Y  Y+N+ N
Sbjct: 331 NNNYNNYNNYNNNYN 345


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 243 CKYSNSLNVAMY 278
           CKY N+  + MY
Sbjct: 223 CKYGNNCEIDMY 234


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 243 CKYSNSLNVAMY 278
           CKY N+  + MY
Sbjct: 20  CKYGNNCEIDMY 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,385
Number of Sequences: 438
Number of extensions: 2614
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)