Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10j04
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1059 - 10775143-10776063                                         36   0.051
10_01_0274 - 2901033-2901778,2902475-2902634                           31   1.1  
05_02_0078 - 6386278-6386291,6386462-6386594,6386721-6388613,639...    29   3.3  
02_05_0880 + 32466538-32467083,32467333-32467644,32467731-324682...    29   4.4  
06_01_1204 + 10397131-10398498                                         28   7.7  
04_01_0142 + 1640472-1640611,1641618-1641744,1642233-1642425,164...    28   7.7  

>08_01_1059 - 10775143-10776063
          Length = 306

 Score = 35.5 bits (78), Expect = 0.051
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 90  HTNATYKKEAKAQRGIVFIVLALALGRGLPGFGNTAVP 203
           H NA  ++ + A+RG      A A GRGL GFG+  VP
Sbjct: 125 HQNAHKRERSLAKRGAAVAAAAAAAGRGLYGFGDPFVP 162


>10_01_0274 - 2901033-2901778,2902475-2902634
          Length = 301

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +2

Query: 653 GSKAPSCPPQPQKWEVKHRRAHLNLKNGK*STEVPTSTSKMGNKAPKCPP 802
           G  AP CPP P              + G+ + E P ST   G  AP+CPP
Sbjct: 213 GQPAPECPPPPTPAP----------ECGQPAPEYPPSTPAYGTPAPECPP 252


>05_02_0078 -
           6386278-6386291,6386462-6386594,6386721-6388613,
           6391153-6391239,6391691-6391765,6393982-6394327,
           6394428-6394450
          Length = 856

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 674 PPQPQKWEVKHRRAHLNLKNGK 739
           PP PQ ++V  R+ H+N++N K
Sbjct: 185 PPSPQTFQVHERQKHINIENMK 206



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 715 PPQPQKWEVKHRSAHLNLKNGK 780
           PP PQ ++V  R  H+N++N K
Sbjct: 185 PPSPQTFQVHERQKHINIENMK 206


>02_05_0880 +
           32466538-32467083,32467333-32467644,32467731-32468201,
           32468481-32469246,32469332-32469774
          Length = 845

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 734 GK*STEVPTSTSKMGNKAPKCPPRPS 811
           GK S   P++    GNK P  PPRPS
Sbjct: 126 GKRSATQPSARGGRGNKVPYKPPRPS 151


>06_01_1204 + 10397131-10398498
          Length = 455

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 328 IKVWVYFFCYVTEGDLVDASSDVAGRDMLLLRDEAVEDASPS 203
           I VWV  + +  E D V ++ D+AG+    + DE V  A+ S
Sbjct: 378 IGVWVDTWSWEGEDDGVVSAEDIAGKVRSAMADEGVRKAAAS 419


>04_01_0142 +
           1640472-1640611,1641618-1641744,1642233-1642425,
           1642793-1643349
          Length = 338

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -1

Query: 190 LPNPGNPRPRASAKTIKTIPRCAFASFLYVAFVCAVLVETCLEXCVILTVFVNSKLKSIL 11
           LP+   P PR    T++T+     A+ +Y AF   +   T +E  V  +V V SK K +L
Sbjct: 232 LPSIAIPNPRTFQATMRTVTNVGQANAVYKAF---LQPPTGVEMTVNPSVLVFSKEKKVL 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,537,319
Number of Sequences: 37544
Number of extensions: 525552
Number of successful extensions: 1639
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)