Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10j02
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    80   3e-16
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    30   0.32 
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.9  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   6.9  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   6.9  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   9.2  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   9.2  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
            eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 39/95 (41%), Positives = 61/95 (64%)
 Frame = -2

Query: 773  IREESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECA 594
            IREE LRTYL  YA  Y S+SL  LA  F+LP QRV  +VS+++   E+ A+LD      
Sbjct: 790  IREEGLRTYLLAYAAFYDSVSLEFLATTFDLPVQRVTVIVSRLLSKREIHAALDQVHGAI 849

Query: 593  ILHRSEPTRMQALALQLADKVGNLVDSNERIFEKQ 489
            I  R E  ++++L + L++K   L ++NE+++E++
Sbjct: 850  IFERVEINKLESLTVSLSEKTAQLNEANEKLYEQK 884


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -2

Query: 758 LRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLD 612
           L T +   +  +   S   LA  F+L  ++V ++V+ M+I E L AS+D
Sbjct: 295 LETNILFLSEFFEVSSTSILAKHFKLSEEQVDTVVADMVIQERLNASID 343


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 697 LTCLNYHVNAYIL*CLK*SSTRSSWHHWMTRAN 599
           L C+NY    YIL  +  SST S   +W    N
Sbjct: 607 LFCVNYLTQKYILMYVSNSSTESGGGYWRPVVN 639


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 361 ALKQKTIREFFYHILINSLRKYYELCA*CEFFNVLDNI 248
           A K   +  FFYH++ N     Y LCA   F  V+  +
Sbjct: 378 ATKTNLVSHFFYHVVSNQ----YGLCAFSSFLVVITKV 411


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -3

Query: 349 KTIREFFYHI--LINSL-RKYYELCA*CEFFNVLDNIKGSSYLYGMGSFAC 206
           + IR+  Y +  L   L R YY+ C   E F+VL     ++  +   S++C
Sbjct: 476 QAIRKMLYRLPDLEKGLSRIYYQRCTPSEMFHVLKGFYKAASAFSKNSYSC 526


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 559 ACIRVGSERCKIAHSLGSSNDAKS 630
           AC+ +G ER  I+ SL   ND+ S
Sbjct: 571 ACVEIGKERKSISASLRDLNDSIS 594


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = -2

Query: 707 RSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECAILHRSEPTRMQALALQLADKVG 528
           ++L     L R +   L+ K++ N+E        +E  +  +     ++A+A +L  +VG
Sbjct: 703 QALPKYVALERLKTWKLLFKLLPNDEFHLLPSAIAEVVLFSKHHDDDLRAMAFELLVEVG 762

Query: 527 NLVDSNERI 501
           N + +  +I
Sbjct: 763 NRMKNGGKI 771


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,822
Number of Sequences: 5004
Number of extensions: 51219
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)