Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10j02
(777 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U91326-1|AAC27674.1| 913|Homo sapiens eIF-3 p110 subunit protein. 135 1e-31
U46025-1|AAD03462.1| 913|Homo sapiens translation intiation fac... 135 1e-31
BT007335-1|AAP35999.1| 325|Homo sapiens eukaryotic translation ... 135 1e-31
BC071705-1|AAH71705.1| 913|Homo sapiens eukaryotic translation ... 135 1e-31
BC001571-1|AAH01571.1| 913|Homo sapiens eukaryotic translation ... 135 1e-31
BC000533-1|AAH00533.1| 325|Homo sapiens EIF3S8 protein protein. 135 1e-31
AY762099-1|AAX07826.1| 913|Homo sapiens cell migration-inducing... 135 1e-31
AK000739-1|BAA91352.1| 913|Homo sapiens protein ( Homo sapiens ... 135 1e-31
AC002544-1|AAC27426.1| 913|Homo sapiens Translation initiation ... 135 1e-31
DQ333316-1|ABD24032.1| 2881|Homo sapiens PRIC320 isoform 1 protein. 31 6.1
DQ059482-1|AAY87153.1| 1995|Homo sapiens ciprofibrate bound prot... 31 6.1
AY243500-1|AAQ24287.1| 2897|Homo sapiens chromatin remodeling fa... 31 6.1
AB002306-1|BAA20767.3| 2759|Homo sapiens KIAA0308 protein. 31 6.1
>U91326-1|AAC27674.1| 913|Homo sapiens eIF-3 p110 subunit protein.
Length = 913
Score = 135 bits (327), Expect = 1e-31
Identities = 62/99 (62%), Positives = 85/99 (85%), Gaps = 1/99 (1%)
Frame = -2
Query: 773 IREESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECA 594
I+EESLRTYLFTY+ VY S+S+ +L+DMFEL VHS++SKMIINEEL+ASLD P++
Sbjct: 783 IQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQTV 842
Query: 593 ILHRSEPTRMQALALQLADKVGNLVDSNERIFE-KQGSF 480
++HR+EPT Q LALQLA+K+G+LV++NER+F+ KQG++
Sbjct: 843 VMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTY 881
>U46025-1|AAD03462.1| 913|Homo sapiens translation intiation factor
eIF-3 p110 subunit protein.
Length = 913
Score = 135 bits (327), Expect = 1e-31
Identities = 62/99 (62%), Positives = 85/99 (85%), Gaps = 1/99 (1%)
Frame = -2
Query: 773 IREESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECA 594
I+EESLRTYLFTY+ VY S+S+ +L+DMFEL VHS++SKMIINEEL+ASLD P++
Sbjct: 783 IQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQTV 842
Query: 593 ILHRSEPTRMQALALQLADKVGNLVDSNERIFE-KQGSF 480
++HR+EPT Q LALQLA+K+G+LV++NER+F+ KQG++
Sbjct: 843 VMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTY 881
>BT007335-1|AAP35999.1| 325|Homo sapiens eukaryotic translation
initiation factor 3, subunit 8, 110kDa protein.
Length = 325
Score = 135 bits (327), Expect = 1e-31
Identities = 62/99 (62%), Positives = 85/99 (85%), Gaps = 1/99 (1%)
Frame = -2
Query: 773 IREESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECA 594
I+EESLRTYLFTY+ VY S+S+ +L+DMFEL VHS++SKMIINEEL+ASLD P++
Sbjct: 195 IQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQTV 254
Query: 593 ILHRSEPTRMQALALQLADKVGNLVDSNERIFE-KQGSF 480
++HR+EPT Q LALQLA+K+G+LV++NER+F+ KQG++
Sbjct: 255 VMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTY 293
>BC071705-1|AAH71705.1| 913|Homo sapiens eukaryotic translation
initiation factor 3, subunit C protein.
Length = 913
Score = 135 bits (327), Expect = 1e-31
Identities = 62/99 (62%), Positives = 85/99 (85%), Gaps = 1/99 (1%)
Frame = -2
Query: 773 IREESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECA 594
I+EESLRTYLFTY+ VY S+S+ +L+DMFEL VHS++SKMIINEEL+ASLD P++
Sbjct: 783 IQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQTV 842
Query: 593 ILHRSEPTRMQALALQLADKVGNLVDSNERIFE-KQGSF 480
++HR+EPT Q LALQLA+K+G+LV++NER+F+ KQG++
Sbjct: 843 VMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTY 881
>BC001571-1|AAH01571.1| 913|Homo sapiens eukaryotic translation
initiation factor 3, subunit 8, 110kDa protein.
Length = 913
Score = 135 bits (327), Expect = 1e-31
Identities = 62/99 (62%), Positives = 85/99 (85%), Gaps = 1/99 (1%)
Frame = -2
Query: 773 IREESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECA 594
I+EESLRTYLFTY+ VY S+S+ +L+DMFEL VHS++SKMIINEEL+ASLD P++
Sbjct: 783 IQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQTV 842
Query: 593 ILHRSEPTRMQALALQLADKVGNLVDSNERIFE-KQGSF 480
++HR+EPT Q LALQLA+K+G+LV++NER+F+ KQG++
Sbjct: 843 VMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTY 881
>BC000533-1|AAH00533.1| 325|Homo sapiens EIF3S8 protein protein.
Length = 325
Score = 135 bits (327), Expect = 1e-31
Identities = 62/99 (62%), Positives = 85/99 (85%), Gaps = 1/99 (1%)
Frame = -2
Query: 773 IREESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECA 594
I+EESLRTYLFTY+ VY S+S+ +L+DMFEL VHS++SKMIINEEL+ASLD P++
Sbjct: 195 IQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQTV 254
Query: 593 ILHRSEPTRMQALALQLADKVGNLVDSNERIFE-KQGSF 480
++HR+EPT Q LALQLA+K+G+LV++NER+F+ KQG++
Sbjct: 255 VMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTY 293
>AY762099-1|AAX07826.1| 913|Homo sapiens cell migration-inducing
protein 17 protein.
Length = 913
Score = 135 bits (327), Expect = 1e-31
Identities = 62/99 (62%), Positives = 85/99 (85%), Gaps = 1/99 (1%)
Frame = -2
Query: 773 IREESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECA 594
I+EESLRTYLFTY+ VY S+S+ +L+DMFEL VHS++SKMIINEEL+ASLD P++
Sbjct: 783 IQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQTV 842
Query: 593 ILHRSEPTRMQALALQLADKVGNLVDSNERIFE-KQGSF 480
++HR+EPT Q LALQLA+K+G+LV++NER+F+ KQG++
Sbjct: 843 VMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTY 881
>AK000739-1|BAA91352.1| 913|Homo sapiens protein ( Homo sapiens cDNA
FLJ20732 fis, clone HEP08682. ).
Length = 913
Score = 135 bits (327), Expect = 1e-31
Identities = 62/99 (62%), Positives = 85/99 (85%), Gaps = 1/99 (1%)
Frame = -2
Query: 773 IREESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECA 594
I+EESLRTYLFTY+ VY S+S+ +L+DMFEL VHS++SKMIINEEL+ASLD P++
Sbjct: 783 IQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQTV 842
Query: 593 ILHRSEPTRMQALALQLADKVGNLVDSNERIFE-KQGSF 480
++HR+EPT Q LALQLA+K+G+LV++NER+F+ KQG++
Sbjct: 843 VMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTY 881
>AC002544-1|AAC27426.1| 913|Homo sapiens Translation initiation
factor eIF-p110 protein.
Length = 913
Score = 135 bits (327), Expect = 1e-31
Identities = 62/99 (62%), Positives = 85/99 (85%), Gaps = 1/99 (1%)
Frame = -2
Query: 773 IREESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECA 594
I+EESLRTYLFTY+ VY S+S+ +L+DMFEL VHS++SKMIINEEL+ASLD P++
Sbjct: 783 IQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQTV 842
Query: 593 ILHRSEPTRMQALALQLADKVGNLVDSNERIFE-KQGSF 480
++HR+EPT Q LALQLA+K+G+LV++NER+F+ KQG++
Sbjct: 843 VMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTY 881
>DQ333316-1|ABD24032.1| 2881|Homo sapiens PRIC320 isoform 1 protein.
Length = 2881
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 541 ASCSARACIRVGSERCKIAHSLGSSNDAKSSSLMIILDTRECTR*RGNSNMSARERNDSD 720
+SCS+R+ S C + S GSS+ + SS + T +S+ S+ E +DSD
Sbjct: 2141 SSCSSRSSSSSSSSSCSHSRS-GSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSD 2199
>DQ059482-1|AAY87153.1| 1995|Homo sapiens ciprofibrate bound protein
p240 isoform PRIC320-2 protein.
Length = 1995
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 541 ASCSARACIRVGSERCKIAHSLGSSNDAKSSSLMIILDTRECTR*RGNSNMSARERNDSD 720
+SCS+R+ S C + S GSS+ + SS + T +S+ S+ E +DSD
Sbjct: 1255 SSCSSRSSSSSSSSSCSHSRS-GSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSD 1313
>AY243500-1|AAQ24287.1| 2897|Homo sapiens chromatin remodeling factor
CHROM1 protein.
Length = 2897
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 541 ASCSARACIRVGSERCKIAHSLGSSNDAKSSSLMIILDTRECTR*RGNSNMSARERNDSD 720
+SCS+R+ S C + S GSS+ + SS + T +S+ S+ E +DSD
Sbjct: 2141 SSCSSRSSSSSSSSSCSHSRS-GSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSD 2199
>AB002306-1|BAA20767.3| 2759|Homo sapiens KIAA0308 protein.
Length = 2759
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 541 ASCSARACIRVGSERCKIAHSLGSSNDAKSSSLMIILDTRECTR*RGNSNMSARERNDSD 720
+SCS+R+ S C + S GSS+ + SS + T +S+ S+ E +DSD
Sbjct: 2018 SSCSSRSSSSSSSSSCSHSRS-GSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSD 2076
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,978,320
Number of Sequences: 237096
Number of extensions: 1768476
Number of successful extensions: 3231
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3231
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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