Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10i24
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    29   0.80 
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    27   3.2  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   5.6  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   9.8  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   9.8  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.8  

>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -2

Query: 509 EGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMY 372
           E   R+D+PP         A+   P P    P+G +Y+   P P Y
Sbjct: 232 ERRSRFDQPPSKRMALTSTARESVPAPLPSPPSGPIYTYTYPKPAY 277


>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 702 IHEGPARSGARLRTRSAGGAL*RALCVRRGPAWVRADG 589
           I++ P +SG R+    AG  L   LC + G   +  DG
Sbjct: 163 IYQHPVQSGMRVLELGAGTGLVSILCAKMGSIVLATDG 200


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 3   FEQVYFYIFSREERQHHIIDL 65
           FE + F+I  R +RQ  IIDL
Sbjct: 318 FEDIQFFISQRTKRQKDIIDL 338


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 719 GARVARGRLRDAPCHRAWNLVH 784
           G RV    +RDA C+  W+  H
Sbjct: 421 GTRVTGQSIRDASCYFVWSFYH 442


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = -2

Query: 482 PYDDRHYDERAQYERPRPAHHIPNGDM----YSRRSPAPMYSGRGGPAPVA 342
           PY+D   D R+   R R     P+G      Y RRSP         P+PV+
Sbjct: 128 PYNDERSDRRSMSPRYRSRSRSPDGRSRSPDYDRRSPK---RNHRSPSPVS 175


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -2

Query: 491 DEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPM----YSGRGGPAPVAGGYERD 324
           D+  YD   YD++  Y+R +PA    N +   +     M    Y+G   P  V   Y  D
Sbjct: 20  DQYAYDSEVYDDQNAYQR-QPADAYSNEEFLDQADYDSMYGEGYNGYDYPTGVTESY-GD 77

Query: 323 HYVP 312
            Y P
Sbjct: 78  EYTP 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,094
Number of Sequences: 5004
Number of extensions: 56103
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)