Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10i24
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0199 - 12940459-12940689,12940787-12940930 35 0.090
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317 33 0.27
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 33 0.27
01_06_0464 + 29571791-29572240 33 0.27
04_01_0363 + 4754650-4755912 32 0.63
02_03_0131 - 15576422-15577021 31 0.84
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 30 1.9
05_03_0517 - 14936085-14936867 30 1.9
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491... 30 2.6
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369... 30 2.6
08_02_0758 + 20848078-20849579,20849660-20849850,20849944-208501... 29 3.4
01_05_0129 + 18431820-18432224 29 3.4
07_01_0866 - 7195305-7195756,7197171-7197447 29 4.5
06_03_0395 - 20354713-20355570 29 4.5
10_08_0500 - 18357828-18358649 29 5.9
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 29 5.9
09_04_0096 - 14563288-14563614,14563717-14564048,14564137-14564356 28 7.8
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243... 28 7.8
08_02_0402 - 16769239-16769504,16769842-16770016,16772762-167730... 28 7.8
07_01_1114 + 10294271-10294379,10296537-10296958,10297101-10297319 28 7.8
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 28 7.8
06_01_0776 - 5805555-5805639,5805769-5806008,5806103-5806173,580... 28 7.8
05_01_0197 - 1417672-1417899,1418921-1418974,1419267-1419552,142... 28 7.8
02_05_0530 - 29804939-29805547,29805658-29805885,29805978-298062... 28 7.8
02_02_0240 + 8196140-8198248,8198381-8198650 28 7.8
02_01_0630 - 4724316-4724945,4725083-4726012 28 7.8
>06_02_0199 - 12940459-12940689,12940787-12940930
Length = 124
Score = 34.7 bits (76), Expect = 0.090
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = +2
Query: 530 GSVRQGKQAPAVHK---RP*GRDPSARTHAGPRRTHSARHRAPPADRVRSRAPDLAGPSC 700
G +G+QA + + +P G PS R G + +PP R R R D P
Sbjct: 6 GRPSKGRQAIGIRRIEDKPGGTSPSPRGGPGCSGRPRSSPSSPPLLRARPRVHDCE-PEA 64
Query: 701 MVRPEAGARVARGRLRDAPCHRAW 772
+ R A+V RLRD R W
Sbjct: 65 LRRAADEAKVEVARLRDVAGRRFW 88
>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
Length = 291
Score = 33.1 bits (72), Expect = 0.27
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 737 PVRHAPPPRDAPYMRDRPGPVRGYERGPPAAP 642
P R PPPR P + P P R ++ PP P
Sbjct: 108 PYRPPPPPRKKPQFQPPPQPPRAWDPSPPPPP 139
>01_06_1507 - 37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 33.1 bits (72), Expect = 0.27
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = -2
Query: 506 GTRRYDEPPYD-DRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGR-GGPAPVAGGY 333
G + PY D H+D R + P +H G+ Y S GR P P AGGY
Sbjct: 949 GRDNHGRYPYARDNHHDSRGRV----PPYHQSGGNSYQSHSAPSAGPGRYAQPPPYAGGY 1004
Query: 332 ERDHYVPQY 306
R + Y
Sbjct: 1005 GRSYQPAPY 1013
>01_06_0464 + 29571791-29572240
Length = 149
Score = 33.1 bits (72), Expect = 0.27
Identities = 30/94 (31%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Frame = +2
Query: 446 TVRARRSGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVHKRP*GRDPSARTHAGPR-- 619
T R R GG R HR V + L +G G P V +R ++R H G
Sbjct: 58 TARCYRGGGELRGLHRRVRHRAGL-LRAGEEGTGGAVPGVGRRRGSTSAASRPHGGGEAY 116
Query: 620 RTHSARHRAPPADRVRSRAPDLAGPSCMVRPEAG 721
R H+A R A R R R +VR E G
Sbjct: 117 RRHAAGGRG-EAVRARRRRHGAQADVDVVRAEDG 149
>04_01_0363 + 4754650-4755912
Length = 420
Score = 31.9 bits (69), Expect = 0.63
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Frame = +2
Query: 452 RARRSGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVHKRP----*GRDPSARTHAGPR 619
R RR+GGR +V PPP+ G R G V +RP G +P+ R G R
Sbjct: 23 RQRRTGGRSTVDRDHVGGPPPVHGIDGPDRPGADR-TVRRRPGSARLGTNPAGRPWQGRR 81
Query: 620 RTHSARHRAPPA 655
R R A
Sbjct: 82 HVRVHRRRQAAA 93
>02_03_0131 - 15576422-15577021
Length = 199
Score = 31.5 bits (68), Expect = 0.84
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -1
Query: 306 HATSIGTRGRSATGP---RHVRGRRPAPVLAATDHE 208
H+ S RGRS+ P RH R R +P AATDH+
Sbjct: 77 HSHSHSHRGRSSPSPDAGRHKRRRDGSPAAAATDHK 112
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 30.3 bits (65), Expect = 1.9
Identities = 37/135 (27%), Positives = 44/135 (32%), Gaps = 9/135 (6%)
Frame = -2
Query: 725 APPPRDAPYMRDRPGPVRGYERGPPAAPYDERYAYGEDRRGFALMDRGPRDXXXXXXXXX 546
APP A Y P V GY PP+AP YA G+A P
Sbjct: 38 APPTIPASYASAPPYSVGGYSDQPPSAP---SYAPPPQYAGYAPPYNNPNPAPYPPESSP 94
Query: 545 PDERYQNHISVVEGTRRYDEP---------PYDDRHYDERAQYERPRPAHHIPNGDMYSR 393
Y ++ G P PYD +Y Y+ P A + GD
Sbjct: 95 APAPYYSYPPTAAGVATQHAPAAEPSPAPLPYDAPYY---GGYQPPPTAGY---GDDDYL 148
Query: 392 RSPAPMYSGRGGPAP 348
A YSG GG P
Sbjct: 149 NEGAYAYSGDGGSEP 163
>05_03_0517 - 14936085-14936867
Length = 260
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 584 RDPSART-HAGPRRTHSARHRAPPADRVRSRAPDLAGPSCMVRPEAGARVARG 739
R PSA A PRRT S P + R+RSR + G C R +G R + G
Sbjct: 134 RPPSAAAASAEPRRTASGSGTCPSSPRMRSRRLHVLG-GCECRAGSGRRRSGG 185
>02_05_0967 -
33148283-33148524,33148602-33148881,33148959-33149151,
33149244-33149324,33149395-33149520,33149758-33150137,
33150367-33150394,33150816-33150979,33151920-33152039,
33152168-33152416
Length = 620
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/48 (41%), Positives = 21/48 (43%)
Frame = +2
Query: 557 PAVHKRP*GRDPSARTHAGPRRTHSARHRAPPADRVRSRAPDLAGPSC 700
PA K P RDPS H RR HR PP R AP + SC
Sbjct: 31 PACRKPP-RRDPSDSVHKVARREIGGGHRRPP----RPAAPSSSAFSC 73
>02_01_0509 +
3694689-3695683,3695799-3695946,3696864-3696943,
3697214-3698062,3698193-3698337,3698426-3698677,
3698780-3699089,3699415-3699524
Length = 962
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 608 AGPRRTHSARHRAPPADRVRSRAPDLAG 691
A PRR S RH +PP RV D G
Sbjct: 35 AAPRRARSGRHASPPPQRVAPEEEDDGG 62
>08_02_0758 +
20848078-20849579,20849660-20849850,20849944-20850179,
20850254-20850973
Length = 882
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +2
Query: 461 RSGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVHKRP*GRDPSARTHAGPRRT 625
RS GR + + P P + R AP VH G + R+H P R+
Sbjct: 66 RSRGRRHKRYSEAPAPAPAPVPAHQARSEAPAPLVHVPRKGMPSTHRSHIAPARS 120
>01_05_0129 + 18431820-18432224
Length = 134
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 584 RDPSARTHAGPRRTHSARHRAPPADRVRS-RAPDLAGPSCMVRPEAGARVARGRLRD 751
+ P++ + A T R +PP R+R R P GP C+ E + G +D
Sbjct: 48 KSPASGSTAAALPTAKLRRCSPPHHRIRRHRVPTATGPRCLPPLERAVVITTGAPKD 104
>07_01_0866 - 7195305-7195756,7197171-7197447
Length = 242
Score = 29.1 bits (62), Expect = 4.5
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = +2
Query: 527 SGSVRQGKQAPAVHKRP*GRDPSARTHAGPRRTHSARHRAPPADRVRSRAPDLAGPSCMV 706
+GSVR+GK++P P P+A PR + R R P +RA A CM
Sbjct: 2 TGSVREGKRSP---DPPLLSPPTA----DPRERETKRRRDPGVGGGSARAASTAWNRCMR 54
Query: 707 RP 712
RP
Sbjct: 55 RP 56
>06_03_0395 - 20354713-20355570
Length = 285
Score = 29.1 bits (62), Expect = 4.5
Identities = 25/78 (32%), Positives = 27/78 (34%)
Frame = +2
Query: 464 SGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVHKRP*GRDPSARTHAGPRRTHSARHR 643
S GRHR HR PPP + S KQ PA R T PR A R
Sbjct: 64 SHGRHRRCHRREP-PPPQTAAAPSPSTTKQ-PATAAAVTNRRRQPTTQIRPRAAVDAADR 121
Query: 644 APPADRVRSRAPDLAGPS 697
AP L P+
Sbjct: 122 GRRRQPPPPTAPPLEAPA 139
>10_08_0500 - 18357828-18358649
Length = 273
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 422 GEQVSGVHTVRARRSGGRHREAHRNVAYPPPLRC 523
G V V+ A R GGRH H + PPP +C
Sbjct: 74 GGGVEAVNAAAAPRQGGRH-AGHPPLPRPPPRQC 106
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -2
Query: 458 ERAQYERPR-PAHHIPNGDMYSRRSPAPMYSGRGGPAPVAGGYERDHY 318
E+++ RPR P G Y RR P Y RG GGY RD Y
Sbjct: 181 EKSRRGRPRTPTPGSYLGHRYDRREPRGRYRSRG------GGYGRDEY 222
>09_04_0096 - 14563288-14563614,14563717-14564048,14564137-14564356
Length = 292
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 443 ERPRPAHHIPNGDMYSRRSPAPMYSGRG 360
+R HH+P+ D + R SPAP S G
Sbjct: 203 DRGTTEHHLPSDDAHLRSSPAPANSVDG 230
>09_01_0165 -
2436769-2437442,2438159-2438224,2438318-2438415,
2439856-2440214
Length = 398
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/62 (27%), Positives = 23/62 (37%)
Frame = -2
Query: 485 PPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPVAGGYERDHYVPQY 306
PP + Y+ P +H N Y +P P +G A A GY+ P Y
Sbjct: 315 PPPPSAYQGNNPGYQGGGPGYHGGNPPPYQAGNPPPYQAGNPVFAGGAPGYQGQGGNPSY 374
Query: 305 MQ 300
Q
Sbjct: 375 QQ 376
>08_02_0402 -
16769239-16769504,16769842-16770016,16772762-16773028,
16773156-16773368
Length = 306
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 425 EQVSGVHTVRARRSGGRHREAHRNV 499
++V+G H R RR+G RH +A N+
Sbjct: 90 KEVNGAHERRRRRTGQRHGKAFANI 114
>07_01_1114 + 10294271-10294379,10296537-10296958,10297101-10297319
Length = 249
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 230 TGAGRRPRTCRGPVALRPRVPMEVAC 307
TG GRRP RGP A+ P C
Sbjct: 7 TGGGRRPPCRRGPAAVAPPARFSCRC 32
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 28.3 bits (60), Expect = 7.8
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +2
Query: 476 HREAHRNVAYPPPLRCDSGSVRQGKQAPAVHKRP*GRDPSARTHAGPRRTHSARHRAPPA 655
HR H + +PP + G G++AP+ PS + HA RR H RH A
Sbjct: 131 HRHGHGH--HPPHAGYNCGG--GGRRAPS---------PSPQMHAASRRHHHGRHHQQVA 177
Query: 656 DRVRS 670
+ RS
Sbjct: 178 PKARS 182
>06_01_0776 -
5805555-5805639,5805769-5806008,5806103-5806173,
5806274-5806627
Length = 249
Score = 28.3 bits (60), Expect = 7.8
Identities = 21/62 (33%), Positives = 25/62 (40%)
Frame = +2
Query: 470 GRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVHKRP*GRDPSARTHAGPRRTHSARHRAP 649
GR R A + PP DS ++A R +A HAG T S R AP
Sbjct: 139 GRERSATTPSSRRPPGDADSSDAESNQEAKQQMCRRSSTTSAAAFHAG-ATTRSFRMMAP 197
Query: 650 PA 655
PA
Sbjct: 198 PA 199
>05_01_0197 -
1417672-1417899,1418921-1418974,1419267-1419552,
1421768-1422291
Length = 363
Score = 28.3 bits (60), Expect = 7.8
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Frame = +2
Query: 419 CGEQVSGVHTVRARRSGGRHREAHRNVAY-PPPLRCDSGSVRQGKQAPAVHKRP*G-RDP 592
CGE G+ + R RR R R + PPP+R +R+G+ + +R G R P
Sbjct: 40 CGELEGGIPSRRRRRCAWIRRWRRRGGWFRPPPVR-----IRRGRPSSDPRRRGGGVRRP 94
Query: 593 -SARTHAGPRRTHSARHRAPPADRVRSRAPDLAGPSCMVRPEAG 721
+R AG RH A VR R D A + + R G
Sbjct: 95 WRSREEAGAAIRSQWRHTA-----VRRRWRDRAETAAVARLRGG 133
>02_05_0530 -
29804939-29805547,29805658-29805885,29805978-29806261,
29807095-29807199,29807648-29808155
Length = 577
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -2
Query: 737 PVR-HAP--PPRDAPYMRDRPGPVRGYERGPPAAPYDERYAYGEDRR 606
P R H P PP+ APY G VR G P + +A GE RR
Sbjct: 471 PARPHEPRLPPQPAPYPEFAAGLVRQDSFGGGELPRQDSFAIGELRR 517
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -2
Query: 722 PPPRDAPYMRDRPGPVRGYERGPP 651
PPP PYM PGP R Y PP
Sbjct: 622 PPPGQNPYM---PGPPRPYSMPPP 642
>02_01_0630 - 4724316-4724945,4725083-4726012
Length = 519
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 233 GAGRRPRTCRGPVALRPRVPMEVACIVVHSD--LSRNLRPLELDL 361
G+GRR C G + +P + + +A ++ H D L ++P ELD+
Sbjct: 448 GSGRR--MCPGIMFAQPNIELALATLLYHFDWSLPAGVKPSELDM 490
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,543,778
Number of Sequences: 37544
Number of extensions: 540634
Number of successful extensions: 2236
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2229
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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