Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10i24
(822 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein. 32 0.57
U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of... 32 0.57
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 30 1.7
Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr... 29 3.0
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 29 3.0
AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical... 29 3.0
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical... 29 3.0
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 29 4.0
U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical pr... 28 7.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 7.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 7.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 7.0
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 28 9.3
U70844-6|AAQ91891.1| 119|Caenorhabditis elegans Hypothetical pr... 28 9.3
U70844-5|AAB09096.2| 148|Caenorhabditis elegans Hypothetical pr... 28 9.3
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 28 9.3
>U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein.
Length = 449
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 401 TCPR*VCGEQVSGVHTVRARRSGGRHREAHRNVAYPPPLRCDSG 532
TCP + E+ SG+H + G RH++ R +AYP D G
Sbjct: 150 TCP--ILSEKWSGIHVSGDQLKGQRHKQEDRFLAYPNGQYMDRG 191
>U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 2 protein.
Length = 449
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 401 TCPR*VCGEQVSGVHTVRARRSGGRHREAHRNVAYPPPLRCDSG 532
TCP + E+ SG+H + G RH++ R +AYP D G
Sbjct: 150 TCP--ILSEKWSGIHVSGDQLKGQRHKQEDRFLAYPNGQYMDRG 191
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Frame = +2
Query: 473 RHREAHRNVAYPPPLRCDSGSVRQGKQAPA---------VHKRP*GRDPSARTHAGPRRT 625
R RE R + PP R S R+ ++P +R R P R+ + PRR
Sbjct: 79 RKREPIRAPSASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVRRSRSPPRRQ 138
Query: 626 HSARHRAPPADRVRSRAP 679
S PP + RSR+P
Sbjct: 139 VSRSRSPPPRRQQRSRSP 156
>Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 29.5 bits (63), Expect = 3.0
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Frame = +2
Query: 452 RARRSGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVHKRP*GRDPSARTHAGPRRTHS 631
R R RE R+ PPP R S APA + R R PS RR +
Sbjct: 251 REIRDSREPREVRRS---PPPRRAASPRKASSPSAPAKNDRKRERSPSGSVAPSVRRESA 307
Query: 632 A----RHRAPPADRVRSRAPDLAGP 694
+ R R P R++ P L P
Sbjct: 308 SPPRRRARIIPRYECRAQKPALLSP 332
>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 29.5 bits (63), Expect = 3.0
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Frame = +2
Query: 452 RARRSGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVHKRP*GRDPSARTHAGPRRTHS 631
R R RE R+ PPP R S APA + R R PS RR +
Sbjct: 251 REIRDSREPREVRRS---PPPRRAASPRKASSPSAPAKNDRKRERSPSGSVAPSVRRESA 307
Query: 632 A----RHRAPPADRVRSRAPDLAGP 694
+ R R P R++ P L P
Sbjct: 308 SPPRRRARIIPRYECRAQKPALLSP 332
>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical
protein R09E10.7 protein.
Length = 1717
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 306 VLWYIVISLVTSGHWSWTS 362
+LW+ + LV SGHW+ TS
Sbjct: 436 LLWWYITKLVQSGHWAQTS 454
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -2
Query: 530 QNHISVVEGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPA 351
Q +S EG+ + +H D Q P P + P RR+ + Y RGGP
Sbjct: 800 QRRLSKFEGSIQNLRAATSTQHLDSMQQLHFPMPDYEPPQPPQQRRRTESSGY--RGGPP 857
Query: 350 P 348
P
Sbjct: 858 P 858
>AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 29.5 bits (63), Expect = 3.0
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Frame = +2
Query: 452 RARRSGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVHKRP*GRDPSARTHAGPRRTHS 631
R R RE R+ PPP R S APA + R R PS RR +
Sbjct: 251 REIRDSREPREVRRS---PPPRRAASPRKASSPSAPAKNDRKRERSPSGSVAPSVRRESA 307
Query: 632 A----RHRAPPADRVRSRAPDLAGP 694
+ R R P R++ P L P
Sbjct: 308 SPPRRRARIIPRYECRAQKPALLSP 332
>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 29.5 bits (63), Expect = 3.0
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Frame = +2
Query: 452 RARRSGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVHKRP*GRDPSARTHAGPRRTHS 631
R R RE R+ PPP R S APA + R R PS RR +
Sbjct: 251 REIRDSREPREVRRS---PPPRRAASPRKASSPSAPAKNDRKRERSPSGSVAPSVRRESA 307
Query: 632 A----RHRAPPADRVRSRAPDLAGP 694
+ R R P R++ P L P
Sbjct: 308 SPPRRRARIIPRYECRAQKPALLSP 332
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 274 RHGAATCPGASARAGTSRH*PRTSG 200
RHG CPG R G+ H PR G
Sbjct: 356 RHGPPHCPGRHGRHGSRSHSPRGHG 380
>U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical
protein T26A8.4 protein.
Length = 574
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 491 DEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGG 357
+E P+ D Y + R P+H +GD + RS P Y GRGG
Sbjct: 111 EEEPFSDTDYRVNRR-RRLSPSHD--DGD-FDPRSKRPYYGGRGG 151
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 28.3 bits (60), Expect = 7.0
Identities = 24/84 (28%), Positives = 34/84 (40%)
Frame = +2
Query: 425 EQVSGVHTVRARRSGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVHKRP*GRDPSART 604
+QV R RRS + E+ + A PP R S S + + R R S
Sbjct: 138 KQVRSNSQRRRRRSDSQ--ESSKRSASPPVRRGRSKSRSRSRSPSRSRSRSRSRSVSRSK 195
Query: 605 HAGPRRTHSARHRAPPADRVRSRA 676
R +RHR+ +R RSR+
Sbjct: 196 SPASRNGRVSRHRSRSQNRSRSRS 219
>Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical
protein Y57G11C.9a protein.
Length = 553
Score = 28.3 bits (60), Expect = 7.0
Identities = 24/84 (28%), Positives = 34/84 (40%)
Frame = +2
Query: 425 EQVSGVHTVRARRSGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVHKRP*GRDPSART 604
+QV R RRS + E+ + A PP R S S + + R R S
Sbjct: 138 KQVRSNSQRRRRRSDSQ--ESSKRSASPPVRRGRSKSRSRSRSPSRSRSRSRSRSVSRSK 195
Query: 605 HAGPRRTHSARHRAPPADRVRSRA 676
R +RHR+ +R RSR+
Sbjct: 196 SPASRNGRVSRHRSRSQNRSRSRS 219
>Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical
protein B0001.8 protein.
Length = 490
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = -2
Query: 536 RYQNHISVVEGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGG 357
R+Q+ G R+ P+ ++ +D+R P + P G +S RSP YS
Sbjct: 171 RHQSPEGSRYGHRQRSISPFRNQQFDQRNSRRDNYPRNQSPRGSRHS-RSPINQYSDERN 229
Query: 356 PAP 348
+P
Sbjct: 230 RSP 232
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 7.0
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Frame = +2
Query: 509 PPLRCDSGSVRQGKQAPAVHKRP*GRDPSARTH-AGPRRTHSARHRAPPADRVRSRAPDL 685
PP S RQ + P G P+ R H GP ++ S+ R P R R+P
Sbjct: 436 PPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESSESREGP--RGPRRSPPT 493
Query: 686 AGPSCMVRPEAGARVARG 739
P P GA +G
Sbjct: 494 GSPP-TGSPPTGAPPKKG 510
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 7.0
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Frame = +2
Query: 509 PPLRCDSGSVRQGKQAPAVHKRP*GRDPSARTH-AGPRRTHSARHRAPPADRVRSRAPDL 685
PP S RQ + P G P+ R H GP ++ S+ R P R R+P
Sbjct: 457 PPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESSESREGP--RGPRRSPPT 514
Query: 686 AGPSCMVRPEAGARVARG 739
P P GA +G
Sbjct: 515 GSPP-TGSPPTGAPPKKG 531
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 7.0
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Frame = +2
Query: 509 PPLRCDSGSVRQGKQAPAVHKRP*GRDPSARTH-AGPRRTHSARHRAPPADRVRSRAPDL 685
PP S RQ + P G P+ R H GP ++ S+ R P R R+P
Sbjct: 442 PPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESSESREGP--RGPRRSPPT 499
Query: 686 AGPSCMVRPEAGARVARG 739
P P GA +G
Sbjct: 500 GSPP-TGSPPTGAPPKKG 516
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.9 bits (59), Expect = 9.3
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Frame = +2
Query: 473 RHREAHRNVAYPPPLRCDSGSVRQGKQAPAVHKRP*G---------RDPSA--RTHAGPR 619
R R + P P R S S + QAP + P G R P+A R P+
Sbjct: 438 RRRRSPSQSKSPAPRRRRSPS--KSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQ 495
Query: 620 RTHSARHRAPPADRVRSRAP 679
R S R R P+ RSR+P
Sbjct: 496 RRRSPRRRRSPSSSSRSRSP 515
>U70844-6|AAQ91891.1| 119|Caenorhabditis elegans Hypothetical
protein ZK154.6b protein.
Length = 119
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 452 RARRSGGRHREAHRNVAYP--PPL 517
RARR+G R R N+AYP PPL
Sbjct: 92 RARRAGRRPRNETDNIAYPSAPPL 115
>U70844-5|AAB09096.2| 148|Caenorhabditis elegans Hypothetical
protein ZK154.6a protein.
Length = 148
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 452 RARRSGGRHREAHRNVAYP--PPL 517
RARR+G R R N+AYP PPL
Sbjct: 121 RARRAGRRPRNETDNIAYPSAPPL 144
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform a protein.
Length = 1256
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 491 DEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYS 369
++P + H DE Q E+P P + + + +R P+P+ S
Sbjct: 414 EQPNFRSYHNDEPTQ-EQPNPRYQRSSSNFMQQRDPSPVRS 453
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,121,479
Number of Sequences: 27780
Number of extensions: 373947
Number of successful extensions: 1211
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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