Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10i24
(822 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8 ... 26 0.37
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 26 0.48
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 26 0.48
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 25 1.1
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 24 1.5
DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex det... 24 2.0
DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex det... 24 2.0
DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex det... 24 2.0
DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex det... 24 2.0
DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex det... 24 2.0
DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex det... 24 2.0
DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex det... 24 2.0
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 24 2.0
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 24 2.0
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 24 2.0
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 24 2.0
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 24 2.0
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 24 2.0
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 24 2.0
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 23 3.4
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 23 3.4
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 23 3.4
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 3.4
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 3.4
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 22 6.0
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 22 6.0
>AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8
protein.
Length = 208
Score = 26.2 bits (55), Expect = 0.37
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 545 GKQAPAVHKRP*--GRDPSARTHAGPRRTHSARHR 643
GK+ P KR GR P+A T GP+R H+ R R
Sbjct: 16 GKRKPIRKKRKFELGR-PAANTKLGPQRIHTVRTR 49
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 25.8 bits (54), Expect = 0.48
Identities = 10/45 (22%), Positives = 24/45 (53%)
Frame = +3
Query: 228 VPARADAPGHVAAPWRSAPASQWRLHVLWYIVISLVTSGHWSWTS 362
+P R AP +A ++ + W + ++ + V+S +W+W++
Sbjct: 800 IPVRWTAPEAIAFRKFTSASDVWSMGIVCWEVMSYGERPYWNWSN 844
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 25.8 bits (54), Expect = 0.48
Identities = 20/65 (30%), Positives = 25/65 (38%)
Frame = -2
Query: 539 ERYQNHISVVEGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRG 360
ER Q R+Y E +R D R ER R H Y + P P+Y G
Sbjct: 277 EREQKSYKNENSYRKYRETS-KERSRDRR---ERGRSREHRIIPSHYIEQIPVPVYYGNF 332
Query: 359 GPAPV 345
P P+
Sbjct: 333 PPRPI 337
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 24.6 bits (51), Expect = 1.1
Identities = 12/63 (19%), Positives = 26/63 (41%)
Frame = -2
Query: 494 YDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPVAGGYERDHYV 315
Y+ Y++ +Y+ + ++I N + P P+Y G P P+ +
Sbjct: 333 YNNNNYNNNNYNNNYNNNCKKLYYNIINIEQIPVPVPVPIYCGNFPPRPMGPWISIQEQI 392
Query: 314 PQY 306
P++
Sbjct: 393 PRF 395
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 24.2 bits (50), Expect = 1.5
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = -2
Query: 539 ERYQNHISVVEGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRG 360
ER Q R Y E + R D R + R R IP+ Y + PAP+Y G
Sbjct: 292 EREQKSYKNEREYREYRETSRE-RSRDRRGR-GRSREHRIIPSH--YIEQIPAPVYYGNF 347
Query: 359 GPAPV 345
P P+
Sbjct: 348 PPRPI 352
>DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -2
Query: 455 RAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPV 345
R + ER R H Y + P P+Y G P P+
Sbjct: 68 RDRRERGRSREHRIIPSHYIEQIPVPVYYGNFPPRPI 104
>DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -2
Query: 455 RAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPV 345
R + ER R H Y + P P+Y G P P+
Sbjct: 68 RDRRERGRSREHRIIPSHYIEQIPVPVYYGNFPPRPI 104
>DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -2
Query: 455 RAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPV 345
R + ER R H Y + P P+Y G P P+
Sbjct: 68 RDRRERGRSREHRIIPSHYIEQIPVPVYYGNFPPRPI 104
>DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -2
Query: 455 RAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPV 345
R + ER R H Y + P P+Y G P P+
Sbjct: 68 RDRRERGRSREHRIIPSHYIEQIPVPVYYGNFPPRPI 104
>DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -2
Query: 455 RAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPV 345
R + ER R H Y + P P+Y G P P+
Sbjct: 68 RDRRERGRSREHRIIPSHYIEQIPVPVYYGNFPPRPI 104
>DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -2
Query: 455 RAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPV 345
R + ER R H Y + P P+Y G P P+
Sbjct: 68 RDRRERGRSREHRIIPSHYIEQIPVPVYYGNFPPRPI 104
>DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -2
Query: 455 RAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPV 345
R + ER R H Y + P P+Y G P P+
Sbjct: 68 RDRRERGRSREHRIIPSHYIEQIPVPVYYGNFPPRPI 104
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -2
Query: 455 RAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPV 345
R + ER R H Y + P P+Y G P P+
Sbjct: 317 RDRRERGRSREHRIIPSHYIEQIPVPVYYGNFPPRPI 353
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -2
Query: 455 RAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPV 345
R + ER R H Y + P P+Y G P P+
Sbjct: 317 RDRRERGRSREHRIIPSHYIEQIPVPVYYGNFPPRPI 353
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -2
Query: 455 RAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPV 345
R + ER R H Y + P P+Y G P P+
Sbjct: 317 RDRRERGRSREHRIIPSHYIEQIPVPVYYGNFPPRPI 353
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -2
Query: 455 RAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPV 345
R + ER R H Y + P P+Y G P P+
Sbjct: 317 RDRRERGRSREHRIIPSHYIEQIPVPVYYGNFPPRPI 353
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -2
Query: 455 RAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPV 345
R + ER R H Y + P P+Y G P P+
Sbjct: 317 RDRRERGRSREHRIIPSHYIEQIPVPVYYGNFPPRPI 353
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -2
Query: 455 RAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPV 345
R + ER R H Y + P P+Y G P P+
Sbjct: 317 RDRRERGRSREHRIIPSHYIEQIPVPVYYGNFPPRPI 353
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -2
Query: 455 RAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPV 345
R + ER R H Y + P P+Y G P P+
Sbjct: 317 RDRRERGRSREHRIIPSHYIEQIPVPVYYGNFPPRPI 353
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 3.4
Identities = 13/63 (20%), Positives = 27/63 (42%)
Frame = -2
Query: 494 YDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPVAGGYERDHYV 315
Y+ Y++ +Y+++ Y +I N + P P+Y G P P+ +
Sbjct: 98 YNNNNYNNNNYNKKLYY-------NIINIEQIPVPVPVPVYCGNFPPRPMGPWISMQEQI 150
Query: 314 PQY 306
P++
Sbjct: 151 PRF 153
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 3.4
Identities = 13/63 (20%), Positives = 27/63 (42%)
Frame = -2
Query: 494 YDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPVAGGYERDHYV 315
Y+ Y++ +Y+++ Y +I N + P P+Y G P P+ +
Sbjct: 98 YNNNNYNNNNYNKKLYY-------NIINIEQIPVPVPVPVYCGNFPPRPMGPWISMQEQI 150
Query: 314 PQY 306
P++
Sbjct: 151 PRF 153
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 23.0 bits (47), Expect = 3.4
Identities = 11/69 (15%), Positives = 26/69 (37%)
Frame = -2
Query: 512 VEGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPVAGGY 333
+ Y+ Y++ +Y+ + ++I + P P+Y G P P+
Sbjct: 90 IHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYIEQIPVPVPVPIYCGNFPPRPMGPWI 149
Query: 332 ERDHYVPQY 306
+P++
Sbjct: 150 SMQEQIPRF 158
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.0 bits (47), Expect = 3.4
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +3
Query: 228 VPARADA-PGHVAAPWRSA 281
VPAR + GHV PWR +
Sbjct: 1312 VPARITSFGGHVVRPWRGS 1330
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.0 bits (47), Expect = 3.4
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +3
Query: 228 VPARADA-PGHVAAPWRSA 281
VPAR + GHV PWR +
Sbjct: 1308 VPARITSFGGHVVRPWRGS 1326
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.2 bits (45), Expect = 6.0
Identities = 12/58 (20%), Positives = 25/58 (43%)
Frame = -2
Query: 479 YDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPVAGGYERDHYVPQY 306
Y+ ++Y+ Y + ++I N + P P+Y G P P+ +P++
Sbjct: 309 YNYKNYNNN--YNSKKLYYNIINIEQIPVPVPVPIYCGNFPPRPMGPWISIQEQIPRF 364
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 6.0
Identities = 12/58 (20%), Positives = 25/58 (43%)
Frame = -2
Query: 479 YDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPVAGGYERDHYVPQY 306
Y+ ++Y+ Y + ++I N + P P+Y G P P+ +P++
Sbjct: 320 YNYKNYNNN--YNSKKLYYNIINIEQIPVPVPVPIYCGNFPPRPMGPWISIQEQIPRF 375
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,084
Number of Sequences: 438
Number of extensions: 5034
Number of successful extensions: 83
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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