Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10i18
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0489 - 29452520-29453104                                         29   4.7  
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539     28   8.1  
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114...    28   8.1  

>02_05_0489 - 29452520-29453104
          Length = 194

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +1

Query: 685 PAASRSVVAGTDSDSWQCCVPASRPQRSRLCMLSLSTLRFKIRHQKFQLPT 837
           P++S S VA     +  C  P+ RP+   +  LSL T R + RH   QLPT
Sbjct: 116 PSSSSSPVAAPLQKNISCIQPSVRPELFAIAALSL-TGRHRRRHH--QLPT 163


>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
          Length = 1908

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +3

Query: 135  AHMYIRSLR*YHQRHIVDR----DEIPFKQAQIYVTLKKQTP 248
            A  Y +SLR YHQRH+  R    D++  ++ Q    L K +P
Sbjct: 1820 AARYQQSLRRYHQRHVWARSLCVDDLVLRRVQTRAGLSKLSP 1861


>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
            33334405-33334484
          Length = 1811

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +3

Query: 135  AHMYIRSLR*YHQRHIVDR----DEIPFKQAQIYVTLKKQTP 248
            A  Y +SLR YHQRH+  R    D++  ++ Q    L K +P
Sbjct: 1729 AARYQQSLRRYHQRHVRARPLCVDDLVLRRVQTRAGLSKLSP 1770


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,329,127
Number of Sequences: 37544
Number of extensions: 358057
Number of successful extensions: 1094
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)