Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10i16
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...   132   2e-32
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   2.6  
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po...    25   5.9  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    24   7.8  

>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score =  132 bits (319), Expect = 2e-32
 Identities = 64/123 (52%), Positives = 83/123 (67%)
 Frame = -1

Query: 405  VVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMHMRSE 226
            + +F   +  TSLQ+  L+ G  E LL+  + G++GV  PF ++ED  FFQ LE  +R E
Sbjct: 1082 MAHFFTNDIPTSLQKVQLVEGAREVLLWTGLLGTVGVFTPFINQEDVRFFQQLEFLLRKE 1141

Query: 225  NSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLDPGKQKAIAGDLERTPAEVSKKLEDI 46
              PL GRDHL++RSYY PVK VIDGDLCE + SL    Q+ IA +L+RT AEVSKK+ED 
Sbjct: 1142 CPPLAGRDHLAYRSYYAPVKCVIDGDLCEMYYSLPHPVQEMIANELDRTIAEVSKKIEDF 1201

Query: 45   RTR 37
            R R
Sbjct: 1202 RVR 1204


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 279 SREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYY 175
           S++     + + +H+RSE++P+    HL ++SY Y
Sbjct: 143 SKKSSTLSRSISLHLRSESAPISLPIHL-YKSYSY 176


>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 320 AYSSASEPPGINVALCREVTVSPT*KLT 403
           AY ++++PPG+N  +    TV+   +LT
Sbjct: 27  AYKNSNKPPGLNPEIYAPFTVNKITELT 54


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 333 ALLYATISGSLGVLLPFTSREDHDFFQHLE 244
           AL +A IS SL    PF   +  + F+HL+
Sbjct: 387 ALKFALISASLTSKKPFQKTDAVNLFKHLD 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,671,805
Number of Sequences: 5004
Number of extensions: 33073
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)