Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10i16
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   5.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.0  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 192 FRSYYYPVKNVIDGDLCE 139
           FR    PV++ I G +CE
Sbjct: 397 FRILTMPVRDAIAGTICE 414


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 63  LILRREYVPNHLRW 104
           L+  REY P +++W
Sbjct: 467 LLQDREYCPRYIKW 480


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -1

Query: 264 DFFQHLEMHMRSENSPLC 211
           D  QH E+HM+      C
Sbjct: 384 DRMQHCELHMQPRKKNCC 401


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -1

Query: 264 DFFQHLEMHMRSENSPLC 211
           D  QH E+HM+      C
Sbjct: 384 DRMQHCELHMQPRKKNCC 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,953
Number of Sequences: 438
Number of extensions: 2247
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)