Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10i14
         (212 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0418 + 21096532-21096627,21096749-21096963,21097062-21097371     28   0.89 
03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172           28   1.2  
03_01_0187 - 1492732-1492935,1493708-1493765,1494871-1494947,149...    27   2.1  
11_05_0033 + 18500092-18501372,18502419-18502826,18502948-185029...    26   3.6  
06_03_1062 - 27293119-27293313,27293390-27293548,27293877-272941...    26   4.8  
06_02_0047 - 10938480-10938599,10939244-10939405,10939481-109396...    25   6.3  

>05_04_0418 + 21096532-21096627,21096749-21096963,21097062-21097371
          Length = 206

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 110 RVTLSA*EVCGCCCKNCATNNYP*CSTGNI 199
           +VT+SA   CGCCC N      P   T  +
Sbjct: 65  QVTVSAIGGCGCCCGNGKPRGIPSSKTNRV 94


>03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172
          Length = 618

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 167 SLHNFYNNNRKPLKPTTLHDGNIKKIGLRKYHICSQADV 51
           SLH+  +   +P  P+  H G   +    K HI +Q+++
Sbjct: 172 SLHSLVDAKTRPKSPSFFHSGTKMRKARSKSHIITQSEI 210


>03_01_0187 -
           1492732-1492935,1493708-1493765,1494871-1494947,
           1495086-1495160,1495259-1495315,1495451-1495567,
           1495805-1495915,1496029-1496151,1496304-1496393,
           1496480-1496605,1496687-1496740,1496975-1497055,
           1497147-1497254,1497443-1497514,1497626-1497688,
           1498417-1498629
          Length = 542

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
 Frame = -1

Query: 176 DNYSLHNFYNNNRKPLKPTT-LHDGNIKKIGLRKYHICSQADVQ---RKYAWRAR 24
           D    HNFYNN    LK      + + K    R+Y      D+    RK  W A+
Sbjct: 424 DTLEFHNFYNNFSSELKDIVWKSESDAKAAKKREYKNAESYDIDSCWRKQRWDAK 478


>11_05_0033 + 18500092-18501372,18502419-18502826,18502948-18502990,
            18503236-18503282,18504582-18505901
          Length = 1032

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 139  ANLSSRQRYTMVTLKKSVYENITYVRKLMCKENMPG 32
            A    RQRY  VT+  SVY  +T + +L  +E  PG
Sbjct: 902  AGFGDRQRYFPVTISISVYLVLTALYRLW-EETWPG 936


>06_03_1062 -
           27293119-27293313,27293390-27293548,27293877-27294194,
           27294535-27294795,27294901-27294978,27295707-27295901
          Length = 401

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 47  FAHQLANICDIFVNRFF*CYHRVTLS 124
           FA++LA++ D++VN  F   HR   S
Sbjct: 134 FANKLASVADLYVNDAFGTAHRAHAS 159


>06_02_0047 -
           10938480-10938599,10939244-10939405,10939481-10939629,
           10939753-10939912
          Length = 196

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -1

Query: 131 LKPTTLHDGNIKKIGLRKYHICSQADVQR---KYAWRARSQ 18
           + PT     N  KIG  K+  C+ ADV+    KY W   +Q
Sbjct: 98  IDPTGEKLKNSDKIGATKHCNCTIADVEHILAKYTWAKEAQ 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,283,233
Number of Sequences: 37544
Number of extensions: 80329
Number of successful extensions: 196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)