Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10i14
(212 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72507-13|CAH60789.1| 515|Caenorhabditis elegans Hypothetical p... 29 0.59
Z72507-10|CAA96629.1| 531|Caenorhabditis elegans Hypothetical p... 29 0.59
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 24 1.8
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 24 1.9
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 24 1.9
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 24 1.9
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 24 1.9
U40947-4|AAZ32798.1| 883|Caenorhabditis elegans Anion/bicarbona... 26 3.2
U40947-3|AAZ32797.1| 956|Caenorhabditis elegans Anion/bicarbona... 26 3.2
AY954522-1|AAX34430.1| 936|Caenorhabditis elegans anion transpo... 26 3.2
AY887906-1|AAX34418.1| 956|Caenorhabditis elegans anion transpo... 26 3.2
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr... 26 4.2
AF036705-5|AAB95172.1| 544|Caenorhabditis elegans Hypothetical ... 26 4.2
U41263-7|AAC24431.1| 462|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z32673-1|CAA83585.1| 472|Caenorhabditis elegans transcription f... 25 9.7
U64846-10|AAW88397.1| 341|Caenorhabditis elegans Serpentine rec... 25 9.7
U61954-5|AAK29812.1| 575|Caenorhabditis elegans Hypothetical pr... 25 9.7
AF099917-5|AAC68783.2| 219|Caenorhabditis elegans F-box a prote... 25 9.7
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ... 25 9.7
AF022980-12|AAG24186.1| 515|Caenorhabditis elegans Hypothetical... 25 9.7
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related... 25 9.7
>Z72507-13|CAH60789.1| 515|Caenorhabditis elegans Hypothetical
protein F17C11.7b protein.
Length = 515
Score = 28.7 bits (61), Expect = 0.59
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -2
Query: 130 SSRQRYTMVTLKKSVYENITYVRKLM-CKENMPGE--HDHKFYN 8
S +RY +++ + + EN+T +RKL+ CKEN H K YN
Sbjct: 142 SVHKRYGVLSGETTCTENLTRLRKLLACKENGISTLLHPSKLYN 185
>Z72507-10|CAA96629.1| 531|Caenorhabditis elegans Hypothetical
protein F17C11.7a protein.
Length = 531
Score = 28.7 bits (61), Expect = 0.59
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -2
Query: 130 SSRQRYTMVTLKKSVYENITYVRKLM-CKENMPGE--HDHKFYN 8
S +RY +++ + + EN+T +RKL+ CKEN H K YN
Sbjct: 158 SVHKRYGVLSGETTCTENLTRLRKLLACKENGISTLLHPSKLYN 201
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 23.8 bits (49), Expect(2) = 1.8
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +2
Query: 137 CGCCCKNCAT 166
C CCC+ C T
Sbjct: 93 CCCCCRRCCT 102
Score = 21.8 bits (44), Expect(2) = 1.8
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +2
Query: 143 CCCKNCATNNYP*C 184
CCC C T P C
Sbjct: 107 CCCTRCCTCCRPCC 120
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 23.8 bits (49), Expect(2) = 1.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +2
Query: 137 CGCCCKNCAT 166
C CCC+ C T
Sbjct: 93 CCCCCRRCCT 102
Score = 21.8 bits (44), Expect(2) = 1.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +2
Query: 143 CCCKNCATNNYP*C 184
CCC C T P C
Sbjct: 107 CCCTRCCTCCRPCC 120
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 23.8 bits (49), Expect(2) = 1.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +2
Query: 137 CGCCCKNCAT 166
C CCC+ C T
Sbjct: 92 CCCCCRRCCT 101
Score = 21.8 bits (44), Expect(2) = 1.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +2
Query: 143 CCCKNCATNNYP*C 184
CCC C T P C
Sbjct: 106 CCCTRCCTCCRPCC 119
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 23.8 bits (49), Expect(2) = 1.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +2
Query: 137 CGCCCKNCAT 166
C CCC+ C T
Sbjct: 91 CCCCCRRCCT 100
Score = 21.8 bits (44), Expect(2) = 1.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +2
Query: 143 CCCKNCATNNYP*C 184
CCC C T P C
Sbjct: 105 CCCTRCCTCCRPCC 118
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 23.8 bits (49), Expect(2) = 1.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +2
Query: 137 CGCCCKNCAT 166
C CCC+ C T
Sbjct: 92 CCCCCRRCCT 101
Score = 21.8 bits (44), Expect(2) = 1.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +2
Query: 143 CCCKNCATNNYP*C 184
CCC C T P C
Sbjct: 106 CCCTRCCTCCRPCC 119
>U40947-4|AAZ32798.1| 883|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 4, isoform b protein.
Length = 883
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 195 LPVLHYG*LFVAQFLQQQPQTSQADNV 115
LP H G F + FL QQP SQ + V
Sbjct: 229 LPTSHSGLRFGSSFLPQQPVVSQLEPV 255
>U40947-3|AAZ32797.1| 956|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 4, isoform a protein.
Length = 956
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 195 LPVLHYG*LFVAQFLQQQPQTSQADNV 115
LP H G F + FL QQP SQ + V
Sbjct: 229 LPTSHSGLRFGSSFLPQQPVVSQLEPV 255
>AY954522-1|AAX34430.1| 936|Caenorhabditis elegans anion
transporter ABTS-4b protein.
Length = 936
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 195 LPVLHYG*LFVAQFLQQQPQTSQADNV 115
LP H G F + FL QQP SQ + V
Sbjct: 229 LPTSHSGLRFGSSFLPQQPVVSQLEPV 255
>AY887906-1|AAX34418.1| 956|Caenorhabditis elegans anion
transporter ABTS-4a protein.
Length = 956
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 195 LPVLHYG*LFVAQFLQQQPQTSQADNV 115
LP H G F + FL QQP SQ + V
Sbjct: 229 LPTSHSGLRFGSSFLPQQPVVSQLEPV 255
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 131 EVCGCCCK-NCATNNYP*CSTGNITDAY 211
+ CG C +CAT N P C+ +T +
Sbjct: 365 QTCGSACPISCATRNQPRCNERCVTGCF 392
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 131 EVCGCCCK-NCATNNYP*CSTGNITDAY 211
+ CG C +CAT N P C+ +T +
Sbjct: 156 QTCGSACPISCATRNQPRCNERCVTGCF 183
>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
protein R09H10.5 protein.
Length = 1603
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 24 SCSPGIFSLHISLRTYV--IFS*TDFFNVTIV 113
SC PG++S H RT V I S DF + +++
Sbjct: 181 SCPPGLYSAHCEARTCVTKIDSVVDFSSQSLI 212
>AF036705-5|AAB95172.1| 544|Caenorhabditis elegans Hypothetical
protein F37C4.6 protein.
Length = 544
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 131 LKPTTLHDGNIKKIGLRKYHI 69
L+P + + N+KK GLR YHI
Sbjct: 74 LRPVVMQELNLKKFGLR-YHI 93
>U41263-7|AAC24431.1| 462|Caenorhabditis elegans Hypothetical
protein T19D12.9 protein.
Length = 462
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 194 CLCCTMDNYSLHNF 153
C+CCT NY+ NF
Sbjct: 31 CICCTNANYNAINF 44
>Z32673-1|CAA83585.1| 472|Caenorhabditis elegans transcription
factor protein.
Length = 472
Score = 24.6 bits (51), Expect = 9.7
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +2
Query: 35 RHIFFAHQLANICDIFVNRF 94
RH+F H + +CD +++F
Sbjct: 20 RHLFIFHSITALCDHMLSKF 39
>U64846-10|AAW88397.1| 341|Caenorhabditis elegans Serpentine
receptor, class h protein194, isoform b protein.
Length = 341
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 41 IFFAHQLANICDIFVNRFF 97
I FA+ + +I IF NRFF
Sbjct: 106 ILFAYMVISIVSIFENRFF 124
>U61954-5|AAK29812.1| 575|Caenorhabditis elegans Hypothetical
protein F41H10.4 protein.
Length = 575
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = -2
Query: 127 SRQRYTMVTLKKSVYENITYVRKLMCKENMP 35
+ +R T+ LK+++ +N+T + L+C+E +P
Sbjct: 124 AEERQTVEQLKEAI-KNLTDEKVLLCQETIP 153
>AF099917-5|AAC68783.2| 219|Caenorhabditis elegans F-box a protein
protein 24 protein.
Length = 219
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 147 QQPQTSQADNVTRW*-H*KNRFTKISHMFAS*CAKKICL 34
Q T +N+ W H N+F I+H+ CAKK L
Sbjct: 76 QYCNTKVLENIEFWITHINNQFENIAHLDQWKCAKKCSL 114
>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
repeats, ras-likedomain, kinase protein 1 protein.
Length = 2395
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = -1
Query: 197 YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKIGL 84
+CL CT + N NN+ L P +++ + L
Sbjct: 736 FCLACTCPRLLILNMSNNSMTSLPPMACVPAHLRTLDL 773
>AF022980-12|AAG24186.1| 515|Caenorhabditis elegans Hypothetical
protein T03D3.1 protein.
Length = 515
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -1
Query: 152 YNNNRKPLKPTTLHDGNIKKIGLRKYHICSQADVQRKY 39
Y + P ++L+D I L YH D+ RKY
Sbjct: 180 YGTSLYPEHDSSLYDKIFNLIRLTYYHYAISPDMDRKY 217
>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
kinase protein.
Length = 2393
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = -1
Query: 197 YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKIGL 84
+CL CT + N NN+ L P +++ + L
Sbjct: 734 FCLACTCPRLLILNMSNNSMTSLPPMACVPAHLRTLDL 771
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,898,755
Number of Sequences: 27780
Number of extensions: 83694
Number of successful extensions: 254
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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