Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10i12
(311 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006714-3|AAK29724.3| 82|Caenorhabditis elegans Hypothetical ... 50 5e-07
Z75710-9|CAB00024.2| 752|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical p... 27 2.1
Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical pr... 27 2.1
AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical... 27 2.1
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 27 2.8
AF039053-11|AAC25879.1| 301|Caenorhabditis elegans Serpentine r... 27 2.8
Z81135-3|CAB03456.1| 251|Caenorhabditis elegans Hypothetical pr... 27 3.6
U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical pr... 27 3.6
U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical p... 27 3.6
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 26 4.8
AF067947-7|AAK68397.2| 295|Caenorhabditis elegans Hypothetical ... 26 4.8
AF003130-3|AAB54123.1| 849|Caenorhabditis elegans Hypothetical ... 26 4.8
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 26 4.8
Z99268-1|CAB16466.1| 715|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z81573-4|CAB04627.1| 715|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z81554-5|CAB04510.2| 401|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z75553-4|CAA99946.1| 389|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z49908-10|CAA90103.1| 715|Caenorhabditis elegans Hypothetical p... 26 6.4
EU068465-1|ABU49430.1| 715|Caenorhabditis elegans PRO-2 protein. 26 6.4
Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z83731-7|CAH10800.1| 1046|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z81505-3|CAH10793.1| 1046|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z74032-7|CAD54140.1| 330|Caenorhabditis elegans Hypothetical pr... 25 8.4
U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic nucleoti... 25 8.4
AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid deplet... 25 8.4
>AC006714-3|AAK29724.3| 82|Caenorhabditis elegans Hypothetical
protein Y119D3B.15 protein.
Length = 82
Score = 49.6 bits (113), Expect = 5e-07
Identities = 16/42 (38%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = -3
Query: 141 PAENWGTE-DADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 19
P + W + +++DV+VWEDNW+D+ + +F++QL+++L K
Sbjct: 35 PVQEWAERAEGEEDDVNVWEDNWDDETHESEFSKQLKEELRK 76
>Z75710-9|CAB00024.2| 752|Caenorhabditis elegans Hypothetical
protein D1081.3 protein.
Length = 752
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -3
Query: 120 EDADDEDVSVWEDNWEDDVIQDDF 49
+D DDED +ED+ E+DVI D++
Sbjct: 718 DDDDDEDCDDFEDD-EEDVIDDEY 740
>Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical
protein R11A5.1b protein.
Length = 896
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 120 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 4
ED DDED ED E+D ++D ++ + E+ +D +
Sbjct: 576 EDDDDEDEEEDEDEEEEDEDEEDEEEEENESEEEEEDDE 614
>Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical
protein R11A5.1a protein.
Length = 906
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 120 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 4
ED DDED ED E+D ++D ++ + E+ +D +
Sbjct: 586 EDDDDEDEEEDEDEEEEDEDEEDEEEEENESEEEEEDDE 624
>AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical
protein Y54G11A.14 protein.
Length = 450
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -3
Query: 120 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLE 22
+D ++ED ED ED+ D+ N++++++ E
Sbjct: 59 DDEEEEDEDEEEDEAEDEAEDDEENEEVKEEKE 91
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 141 PAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQ-QLEKLKDQK 4
P E E D+E+ ED ED+ +++D ++ QLE K++K
Sbjct: 165 PEEEESVEGEDEEESQEVEDLKEDEKMEEDEKEEEEDVQLESEKNEK 211
>AF039053-11|AAC25879.1| 301|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 19 protein.
Length = 301
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 181 VYFLFVSHYTVMIIEIRKYH 240
VY LFV Y+++ E+RKYH
Sbjct: 63 VYLLFVIAYSLIPEELRKYH 82
>Z81135-3|CAB03456.1| 251|Caenorhabditis elegans Hypothetical
protein W01G7.4 protein.
Length = 251
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 114 ADDEDVSVWEDNWEDD 67
ADDED S EDNW +D
Sbjct: 171 ADDEDDSNDEDNWRND 186
>U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical
protein K07E3.1 protein.
Length = 1061
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 84 DNWEDDVIQDDFNQQLRQQLEKLKDQK 4
D +DDV DD + + R+Q +LK QK
Sbjct: 664 DEEDDDVASDDPDAEKRRQKRRLKRQK 690
>U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical
protein T02G5.12 protein.
Length = 556
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -3
Query: 111 DDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKL 16
DD+D + D +ED+V + D+N++ +++ L
Sbjct: 190 DDDDDGEYNDVFEDEVKKIDYNKRFEEKVSLL 221
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 117 DADDEDVSVWEDNWEDDVIQDDFNQQL 37
D DED+ +EDNW +I + FN +L
Sbjct: 1079 DEIDEDIKQFEDNW---LIYEMFNNEL 1102
>AF067947-7|AAK68397.2| 295|Caenorhabditis elegans Hypothetical
protein T10B5.3 protein.
Length = 295
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -3
Query: 138 AENWGTEDADDEDVSVWEDNWEDDVIQDD 52
+E++ T +DD+ S +D WED+ +++D
Sbjct: 226 SEDFDTIGSDDDGESSEDDWWEDNELKED 254
>AF003130-3|AAB54123.1| 849|Caenorhabditis elegans Hypothetical
protein F55A12.5 protein.
Length = 849
Score = 26.2 bits (55), Expect = 4.8
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 195 KQKVDLGXXXXXXXXXXFPAENWGTEDADDEDV-SVWEDNWEDDVIQDDFNQQLRQQLEK 19
K+KV++ + E+ E DDED +E+ E++V DDF + QLE+
Sbjct: 661 KKKVEIPVISSESEEEEYEEEDEYEEYEDDEDEDEYYEEEEENEVEDDDFLTE--TQLEE 718
Query: 18 LKDQ 7
L +Q
Sbjct: 719 LMEQ 722
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 135 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQ 7
E W E +DD VS W ++ DD++ N ++ LK++
Sbjct: 2425 EQW--EYSDDSSVSTWFNDGTDDILNRLINSDYLEEHMILKER 2465
>Z99268-1|CAB16466.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -3
Query: 135 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 4
E+ G +D DD++ E+ E D +DD + +++K++ K
Sbjct: 97 EDDGDDDEDDDEDDEDEEEEESDDDEDDEEDDDKTKIKKIRKPK 140
>Z81573-4|CAB04627.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -3
Query: 135 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 4
E+ G +D DD++ E+ E D +DD + +++K++ K
Sbjct: 97 EDDGDDDEDDDEDDEDEEEEESDDDEDDEEDDDKTKIKKIRKPK 140
>Z81554-5|CAB04510.2| 401|Caenorhabditis elegans Hypothetical
protein F57G4.8 protein.
Length = 401
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 117 DADDEDVSVWEDNWED 70
D DDEDV W +N +D
Sbjct: 140 DNDDEDVQYWRENVDD 155
>Z75553-4|CAA99946.1| 389|Caenorhabditis elegans Hypothetical
protein ZC443.4 protein.
Length = 389
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 120 EDADDEDVSVWEDNWEDDV-IQDDFNQQLRQQ 28
ED DD+D E+N EDD ++DD + + Q
Sbjct: 277 EDDDDDDDEEEEENVEDDENLEDDEDDRTEDQ 308
>Z49908-10|CAA90103.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -3
Query: 135 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 4
E+ G +D DD++ E+ E D +DD + +++K++ K
Sbjct: 97 EDDGDDDEDDDEDDEDEEEEESDDDEDDEEDDDKTKIKKIRKPK 140
>EU068465-1|ABU49430.1| 715|Caenorhabditis elegans PRO-2 protein.
Length = 715
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -3
Query: 135 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 4
E+ G +D DD++ E+ E D +DD + +++K++ K
Sbjct: 97 EDDGDDDEDDDEDDEDEEEEESDDDEDDEEDDDKTKIKKIRKPK 140
>Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -3
Query: 129 WGTEDADDEDVSVWEDNWEDDVIQDDFN 46
W T DD+D W D + + +DF+
Sbjct: 732 WSTLQRDDDDEEEWNDEEDLSDVGEDFD 759
>Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical
protein F16A11.3b protein.
Length = 1364
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 141 PAENWGTEDADDEDVSVWEDNWEDDV-IQDDFNQQLRQQLEKLKDQK 4
P+ + +ED D+ ++ +D W +V DDF QL ++ ++QK
Sbjct: 399 PSNSTFSEDTSDDFRTLPKDTWLPEVDFNDDFEYQL-GSIDNTQNQK 444
>Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical
protein F16A11.3a protein.
Length = 1490
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 141 PAENWGTEDADDEDVSVWEDNWEDDV-IQDDFNQQLRQQLEKLKDQK 4
P+ + +ED D+ ++ +D W +V DDF QL ++ ++QK
Sbjct: 399 PSNSTFSEDTSDDFRTLPKDTWLPEVDFNDDFEYQL-GSIDNTQNQK 444
>Z83731-7|CAH10800.1| 1046|Caenorhabditis elegans Hypothetical
protein F16A11.3c protein.
Length = 1046
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 141 PAENWGTEDADDEDVSVWEDNWEDDV-IQDDFNQQLRQQLEKLKDQK 4
P+ + +ED D+ ++ +D W +V DDF QL ++ ++QK
Sbjct: 399 PSNSTFSEDTSDDFRTLPKDTWLPEVDFNDDFEYQL-GSIDNTQNQK 444
>Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -3
Query: 129 WGTEDADDEDVSVWEDNWEDDVIQDDFN 46
W T DD+D W D + + +DF+
Sbjct: 732 WSTLQRDDDDEEEWNDEEDLSDVGEDFD 759
>Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical
protein F16A11.3b protein.
Length = 1364
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 141 PAENWGTEDADDEDVSVWEDNWEDDV-IQDDFNQQLRQQLEKLKDQK 4
P+ + +ED D+ ++ +D W +V DDF QL ++ ++QK
Sbjct: 399 PSNSTFSEDTSDDFRTLPKDTWLPEVDFNDDFEYQL-GSIDNTQNQK 444
>Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical
protein F16A11.3a protein.
Length = 1490
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 141 PAENWGTEDADDEDVSVWEDNWEDDV-IQDDFNQQLRQQLEKLKDQK 4
P+ + +ED D+ ++ +D W +V DDF QL ++ ++QK
Sbjct: 399 PSNSTFSEDTSDDFRTLPKDTWLPEVDFNDDFEYQL-GSIDNTQNQK 444
>Z81505-3|CAH10793.1| 1046|Caenorhabditis elegans Hypothetical
protein F16A11.3c protein.
Length = 1046
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 141 PAENWGTEDADDEDVSVWEDNWEDDV-IQDDFNQQLRQQLEKLKDQK 4
P+ + +ED D+ ++ +D W +V DDF QL ++ ++QK
Sbjct: 399 PSNSTFSEDTSDDFRTLPKDTWLPEVDFNDDFEYQL-GSIDNTQNQK 444
>Z74032-7|CAD54140.1| 330|Caenorhabditis elegans Hypothetical
protein F35B12.9 protein.
Length = 330
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = -3
Query: 123 TEDADDEDVSVWEDNWEDDVIQD-DFNQQLR 34
++ +D+ +S D++ED+V+Q+ + NQQ R
Sbjct: 34 SDSSDESSISSEADSFEDNVVQNKNTNQQRR 64
>U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic
nucleotide-gated channel protein.
Length = 800
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -3
Query: 129 WGTEDADDEDVSVWEDNWEDDVIQDDFN 46
W T DD+D W D + + +DF+
Sbjct: 732 WSTLQRDDDDEEEWNDEEDLSDVGEDFD 759
>AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid depleted
protein 3 protein.
Length = 1599
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 111 DDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 4
DD+D+S W D E D D+ + +L+KLK ++
Sbjct: 388 DDDDMSFWGDEGELD--SDEEKVEGASELKKLKAEE 421
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,912,341
Number of Sequences: 27780
Number of extensions: 109671
Number of successful extensions: 490
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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