Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10i09
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    29   0.65 
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    29   0.86 
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    29   1.1  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    27   4.6  
SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces...    26   6.0  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   8.0  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   8.0  

>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 208 NARWIHADKYFDTAAQLYSYIVQNKVSDVH 119
           + +W H  +YF  A + Y Y+  N  +++H
Sbjct: 147 DVKWFHNHQYFAVAQKKYVYVYDNMGTEIH 176


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 702 TPRFLNIAEFVTSFLYCLTDMSELTS 625
           T RFLN+ +F    + CLT+++ LTS
Sbjct: 239 TNRFLNVPDFRNVTIECLTEIASLTS 264


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
 Frame = +2

Query: 548 EKCHNVTVVKPKLFAYSTKTYCGNITEVNSDMSVKQYKKLVTN---SAMFRKRGVVSD-T 715
           E+ HN T +  K FAY+++ +         +  V++YK +V N     MF++ G+ SD +
Sbjct: 359 EQLHNSTDLLKKAFAYTSEVF---------EKIVEEYKNIVQNDFYDLMFKRVGLPSDSS 409

Query: 716 DTVTAANYLGLIEMFKDQFDN 778
           + +   + L ++E ++    N
Sbjct: 410 NKILITDLLQILEDYELDMPN 430


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 341 PKINTIEVEFKGQHVIVQLYTEARRHDVGRDCVQ 240
           P++ TIE  F   H +V+LY   +   +GRD  Q
Sbjct: 694 PQLFTIEEAFTTVHHLVRLYKVKKPDTLGRDLKQ 727


>SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 196

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 604 FGRIRKQFGLDDRNVVTFFGKGFNIHFVDYMVAVSW 497
           +G++    G   +N    +GKG  +H   YM++ +W
Sbjct: 89  YGQLYANDGRSSKNPTQNYGKGGLLHEHRYMISCTW 124


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 373 HNQITSTVIRVEAKNDYSLLACTAVYAYCC 462
           HN +   +  +E + DY  ++   V AYCC
Sbjct: 114 HNSLQKIIKTLEKELDYRPVSVQLVDAYCC 143


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 737 YLGLIEMFKDQFDNINVRNLIANNQTF 817
           YL + E+ K + +++ +RN +A  QTF
Sbjct: 70  YLYISEILKSKAESLRIRNSLATLQTF 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,574,993
Number of Sequences: 5004
Number of extensions: 74009
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)