Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10i09
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601...    35   0.097
11_01_0566 + 4466318-4466695,4466736-4466909,4466941-4467038,446...    30   2.1  
08_01_0269 - 2172363-2172538,2172632-2172697,2172790-2172887,217...    30   2.8  
01_01_1124 + 8916863-8917090,8917745-8917936,8918115-8918280,891...    30   2.8  
09_01_0136 - 2030523-2031062,2032349-2032534,2032642-2032796,203...    29   3.6  
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875...    29   6.4  
07_01_0516 - 3850252-3852870                                           28   8.4  
06_01_0889 - 6807449-6809257                                           28   8.4  

>11_01_0727 -
           6010537-6010548,6011029-6011606,6011709-6011774,
           6011867-6011964,6013238-6013608
          Length = 374

 Score = 34.7 bits (76), Expect = 0.097
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 488 FPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCGNITEVNSDMSVK 652
           FP P  +   + + Y++ LA+   +    K +++A+ST TY G    +  +MS K
Sbjct: 100 FPDPKPTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVGFQAVMTEEMSEK 154


>11_01_0566 +
           4466318-4466695,4466736-4466909,4466941-4467038,
           4467211-4467346
          Length = 261

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 195 FTPTNIL-IPPHNCIVTLCKTKCPTCTSNRWTT 100
           F+P  I  + P   +VT C  KCP C S  W T
Sbjct: 156 FSPWLIAEMDPMMLMVTKCSMKCPECDSKGWAT 188


>08_01_0269 -
           2172363-2172538,2172632-2172697,2172790-2172887,
           2173442-2173791
          Length = 229

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 476 ILAVFPT-PAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCGNITEVNSDMSVK 652
           I+  FP  PA +   +   Y+  LA    ++   K  ++A+ST TY G    V+ + S K
Sbjct: 88  IVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEETSEK 147


>01_01_1124 +
           8916863-8917090,8917745-8917936,8918115-8918280,
           8918373-8918794
          Length = 335

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 790 AHVDIVKLVFEHFNQAQVVGGGYRVCIGHHSALSKHCR 677
           A+ D V L F+HF Q+ V  G      G    + K+CR
Sbjct: 291 AYADDVNLFFKHFAQSMVNMGNISPLTGSQGEIRKNCR 328


>09_01_0136 -
           2030523-2031062,2032349-2032534,2032642-2032796,
           2032917-2033079
          Length = 347

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -1

Query: 214 TVNARWIHADKYFDTAAQLY-----SYIVQNKVSDVHVKPLDDGGGR 89
           TVNA   H  KY   +A+ Y     +Y+    V++ HV+  D GG R
Sbjct: 209 TVNASTEHVMKYLTGSAKTYVNAAQAYVHVRDVAEAHVRVYDCGGAR 255


>04_04_1099 -
           30886361-30886591,30886739-30886941,30887030-30887555,
           30887751-30887988,30888592-30888695,30888784-30889059,
           30889216-30889218
          Length = 526

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -2

Query: 768 WSLNISIKPR*LAAVTVSVSDTTPRFLNIAEFVTSFLYCLTDMSELTSVILPQ*VLVEYA 589
           W L +S  P  +  +   ++  +PRFL +   VT  +  L  M+ L +V LP   LV   
Sbjct: 217 WLLALSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMDVLEKMARLNNVQLPSGRLVSDK 276

Query: 588 N 586
           N
Sbjct: 277 N 277


>07_01_0516 - 3850252-3852870
          Length = 872

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 695 RGVVSDTDTVTAANYLGLIEMFKDQFDNINVRNLIANN 808
           + V+S T  +      GL++M  D FD + VRN +  N
Sbjct: 317 KDVISWTGLLNGYMEFGLVDMAMDVFDRMPVRNFVTYN 354


>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 701 VVSDTDTVTAANYLGLIEMFKDQFDNINVRNLIA-NNQTFDLVVVEAFADYALVF 862
           VVS T  V     LGL++  ++ FD +  RNL++ N+     V  + F D   VF
Sbjct: 164 VVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVF 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,592,083
Number of Sequences: 37544
Number of extensions: 489074
Number of successful extensions: 1216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)