Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10i09
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    24   1.6  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    24   1.6  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    24   2.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.6  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = +2

Query: 752 EMFKDQFDNINVRNLIANNQ 811
           E++ D++D +N+  ++AN++
Sbjct: 21  ELYSDKYDYVNIDEILANDR 40


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = +2

Query: 752 EMFKDQFDNINVRNLIANNQ 811
           E++ D++D +N+  ++AN++
Sbjct: 21  ELYSDKYDYVNIDEILANDR 40


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 735 LAAVTVSVSDTTPRFLNIAEFVTSFLYCLTD 643
           LA + V   D   +FL    +V   L+C+ D
Sbjct: 12  LALINVKAQDDISKFLKDRPYVQKQLHCILD 42


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 619 ITAISFGRIRKQFGLDDRNVVTFF 548
           +  I+FG +  QFG   + +V FF
Sbjct: 245 VFCITFGLVAGQFGAQGKLIVDFF 268


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 286 NCTITCCPLNSTSIVLIFGYKKVAL*NLLHNQITSTVIRV 405
           +CTI     N T I ++F  ++    +L H  I S +I V
Sbjct: 190 DCTIEYSTGNFTCIQIVFNLRRRLGYHLFHTYIPSALIVV 229


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 496 RRKHGQYIDRIYSSKRRQQCKPAKNSHFL 410
           RR+  QY D +YS  R  +   A+  H L
Sbjct: 43  RRRWKQYQDTLYSGTRSSESLTAQAHHRL 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,174
Number of Sequences: 438
Number of extensions: 5575
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)