Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10i07
         (260 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   1.3  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   2.2  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    24   2.9  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    24   2.9  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    24   3.8  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    23   5.1  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    23   5.1  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    23   6.7  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    23   6.7  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    23   6.7  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    23   6.7  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    23   6.7  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    23   6.7  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    23   6.7  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    23   8.8  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    23   8.8  
SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase |Schizos...    23   8.8  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    23   8.8  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    23   8.8  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = -1

Query: 254 IDNEQRNMIRTSSHVLNVQENIMTSNCASSPYSCEATSACAEAQQVMIDNFVFFHMYTAD 75
           I N   N  R   +  N+QE I  + C  S  + E T  CA+  +   ++ V        
Sbjct: 176 IVNFTSNPNRYRFYETNMQELIRKTICEKSDKAIEKTFLCAQLFKTFCEDGVLQTFQPGF 235

Query: 74  IQID 63
           IQ+D
Sbjct: 236 IQLD 239


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 84  HRRHTNRRKGAMRRAFG 34
           H RH  ++KG  +R FG
Sbjct: 503 HHRHHKKKKGGNKRVFG 519


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 65  RFVCRRC--TCERKQSYQSLPAELLRKRTLPRTNMAMTHSLTSLYFPGRS 208
           +++C+RC      K  Y     +LL+ + LP++      SLT +   G S
Sbjct: 2   QYLCQRCHSLINFKDVYDD---DLLKLKNLPKSRFVQASSLTEMNESGES 48


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
 Frame = +2

Query: 71  VCRRCTCERKQSYQSL----PAELLR 136
           +CR+C     QSYQ L    PA LL+
Sbjct: 293 ICRKCVITILQSYQQLIVDQPANLLK 318


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 9   FIVNYCKRGRTHAALHLCVDLYVGGVHV 92
           +++N C        + LC D+YV  V +
Sbjct: 225 YMLNKCSAENKFVVIELCEDIYVDTVQI 252


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +3

Query: 6    MFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASGRCL 152
            +F++      +    LH+  D+Y G + ++    I H     C  GR L
Sbjct: 1080 LFMITRGGVSKAQKGLHVNEDIYAGMIALQRGGRIKHCDYYQCGKGRDL 1128


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 152 EATSACAEAQQVMIDNFVFFHMYTADIQIDAKVQCGVRS 36
           +A  A  E +Q + D +  F     D+Q D K Q  VRS
Sbjct: 214 DAQKAKEETKQKLQDLYEEFKSVAVDLQGDPKYQHPVRS 252


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 5   NVYRQLLQTRPNARRIAPLRRFVC 76
           ++   L++TR   RR+  + RF C
Sbjct: 364 SILGSLIETRKTLRRMREMSRFTC 387


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 62  RRFVCRRCTCERKQSYQSLP 121
           R++V R  T E +QSY +LP
Sbjct: 309 RQYVGRPVTNETRQSYPNLP 328


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 23  LQTRPNARRIAPLRRFVCRRCTCERKQSYQSLPAEL 130
           LQT P+   + P    +CR C  E +  Y     EL
Sbjct: 167 LQTVPSTDSLPPFETVLCRVCDHEIQNWYFEHHTEL 202


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 203  VQENIMTSNCASSPYSCEATSACAEAQQVMIDNFVF 96
            VQE +  +   S+ ++CE+TSA      +  +  VF
Sbjct: 965  VQEKLSAAYKESAAFACESTSAIRTVASLNREENVF 1000


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 62  RRFVCRRCTCERKQSYQSLP 121
           R++V R  T E +QSY +LP
Sbjct: 309 RQYVGRPVTNETRQSYPNLP 328


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 197 ENIMTSNCASSPYSCEATSACAE 129
           +N+   +  +SP SCE +SA A+
Sbjct: 842 DNVSKKDVETSPGSCETSSAFAK 864


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 2   SNVYRQLLQTRPNARRIAPLRRFVCRRCTCERKQSYQSLP 121
           S VY+ L+    ++ + A LRR   R  T   + +  S+P
Sbjct: 102 SQVYKPLIDYYTSSPQTATLRRLAERLSTVAEEMASSSVP 141


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 201 PGKYNDVKLCVIAI 160
           P  YN +KLCVI +
Sbjct: 389 PSTYNHLKLCVILL 402


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 248 NEQRNMIRTSSHVLNV 201
           NE+ NM+RT+ H+  V
Sbjct: 140 NERANMLRTAPHLCTV 155


>SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 206

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 8/34 (23%), Positives = 14/34 (41%)
 Frame = +2

Query: 128 LLRKRTLPRTNMAMTHSLTSLYFPGRSARDCWFL 229
           ++  +  P+        L   YF G +  DCW +
Sbjct: 150 VVHNKVKPKNAQLDKEILDKYYFTGCNTPDCWIM 183


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 213 RAERPGKYNDVKLCVIAIFVRGNVRLRRSSAGN 115
           RA+R  ++ND  L ++ +  R NV L     GN
Sbjct: 35  RAQR--QFNDGGLSIVKMLFRSNVLLLVGGGGN 65


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 191  IMTSNCASSPYSCEAT 144
            + T+N A SPYS E T
Sbjct: 1170 LATNNTALSPYSAEVT 1185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,067,918
Number of Sequences: 5004
Number of extensions: 18365
Number of successful extensions: 64
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)