Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10i07
(260 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0259 - 11161447-11161706,11161764-11164266 27 1.6
05_04_0314 - 20133281-20133824,20133911-20134991,20135116-20135488 27 2.1
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112 27 2.1
04_04_0728 - 27608011-27608136,27608345-27608401,27608598-276086... 26 3.6
08_02_0238 + 14665813-14668798,14669088-14669125 26 4.8
06_01_1000 - 7778907-7780721 26 4.8
06_01_0554 - 3945185-3945665,3946122-3947011,3947635-3947967 26 4.8
04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804... 26 4.8
01_06_0638 - 30768546-30768779,30768908-30769017,30769301-307694... 26 4.8
06_03_0008 - 15333772-15333785,15335052-15335517 25 6.3
02_05_0775 + 31681720-31681953,31682106-31682246,31682357-316824... 25 6.3
07_01_0314 - 2219664-2221091 25 8.4
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 25 8.4
04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543... 25 8.4
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508... 25 8.4
03_03_0229 - 15612829-15612897,15612982-15613083,15613503-156135... 25 8.4
02_02_0186 + 7594197-7594281,7594409-7594513,7595062-7595238,759... 25 8.4
01_06_0617 - 30643177-30643506 25 8.4
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 25 8.4
>05_03_0259 - 11161447-11161706,11161764-11164266
Length = 920
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 6 MFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASGR 146
M I YC+RGR A + ++ G+HV V N + C GR
Sbjct: 329 MMINGYCQRGRMDDATRVRNEMRDAGIHV-NLFVYNTMINGLCKLGR 374
>05_04_0314 - 20133281-20133824,20133911-20134991,20135116-20135488
Length = 665
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 65 RFVCRRCTCERKQSYQSLPAELLR 136
RF+C C+C + SY ++ A LL+
Sbjct: 2 RFLCDYCSCVFRGSYSTVKAHLLK 25
>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
Length = 1372
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 21 YCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASG 143
+CK G AL VD+Y G+ V + + N L SF G
Sbjct: 519 FCKAGHAKEALKYFVDIYRSGL-VANSVIHNALLCSFYREG 558
>04_04_0728 -
27608011-27608136,27608345-27608401,27608598-27608665,
27608697-27608793,27610467-27610532,27610788-27611174
Length = 266
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 161 MAMTHSLTSLYFPGRSARDCWFLSCCV 241
M +L L FPG+ + WF CC+
Sbjct: 171 MRREFNLPCLNFPGKILLNTWFNFCCI 197
>08_02_0238 + 14665813-14668798,14669088-14669125
Length = 1007
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 162 IFVRGNVRLRRSSAGND**LCFLSHVHRRHTNR 64
+FV+GN+ L SS LC S H RHT+R
Sbjct: 726 VFVQGNIMLCSSSPMLQLPLCLASSRH-RHTSR 757
>06_01_1000 - 7778907-7780721
Length = 604
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 21 YCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSF-CASG 143
YCK G+ AL + + G+H N VI + L+ F C G
Sbjct: 468 YCKVGKIDEALRILRSMDESGIH--PNNVIYNTLIDFLCKRG 507
>06_01_0554 - 3945185-3945665,3946122-3947011,3947635-3947967
Length = 567
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 186 HYIFLDVQHVTAGSYHVALLVINHF 260
H++F + V G Y VA +++HF
Sbjct: 210 HFLFTQLSSVLLGVYLVAATILDHF 234
>04_01_0613 -
8042568-8042686,8043107-8043206,8043550-8043594,
8043691-8043770,8045082-8046322,8047077-8047507
Length = 671
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -1
Query: 143 SACAEAQQVMIDNFVFFHMYTADIQIDAKVQCGV 42
S CA + + + +M +D IDA+V C +
Sbjct: 178 STCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCAL 211
>01_06_0638 -
30768546-30768779,30768908-30769017,30769301-30769490,
30769842-30769914,30770007-30770063,30770147-30770211,
30770278-30770488,30770568-30770650,30771123-30771158,
30771611-30771713,30771813-30771899,30772210-30772403
Length = 480
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 57 LCVDLYVGGVHVKENKVINHYLLSFCASG 143
LC + GG+ K K +HY +C SG
Sbjct: 400 LCAQVLDGGLRDKPGKNRDHYHSCYCLSG 428
>06_03_0008 - 15333772-15333785,15335052-15335517
Length = 159
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 44 RRIAPLRRFVCRRCTCERKQSYQSLPAELLRKRTLPRTNMAMTHSLTSLYFPGRSARD 217
R IAP + + ++ S+P++ LR+ P N++ SL L F D
Sbjct: 24 RVIAPQKTLPTDKPAVPMPPTFNSMPSKTLREFAAPSANISNQPSLKYLVFAQAKTTD 81
>02_05_0775 +
31681720-31681953,31682106-31682246,31682357-31682428,
31682513-31682590,31682683-31682736,31682862-31682963,
31683112-31683189,31683322-31683391,31683592-31683662,
31683826-31683918,31684029-31684109
Length = 357
Score = 25.4 bits (53), Expect = 6.3
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +2
Query: 68 FVCRRCTCERKQSYQSLPAELLRKRTLPRTNMAMTHSLTSLYFPGRSARDCWFLSCCVAR 247
F CR +Q+Y L A + R+ T+ A +S RSA D + V +
Sbjct: 21 FACRSAAASMRQTYLDLAAAAVAARSASCTSWADAMRASSPTRSSRSASDVDEFTAWVRK 80
Query: 248 YQS 256
+ S
Sbjct: 81 HPS 83
>07_01_0314 - 2219664-2221091
Length = 475
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 41 ARRIAPLRRFVCRRCTCERKQSYQSLPAELLRKRTLPRTNMAMTHS 178
ARR+AP R V R R + LP E LP + A+ S
Sbjct: 295 ARRLAPGREVVFRASVNSRGRLRPPLPPEYFGNSILPASTEAVPAS 340
>04_04_1690 -
35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 25.0 bits (52), Expect = 8.4
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Frame = -1
Query: 260 EVIDNEQRNMIRTSSHVLNVQENIMTSNCASSP----YSCEATSACAEAQQVMIDNFVFF 93
E+ DN ++ T + + E CA+SP + + + ++ +N F+
Sbjct: 36 ELEDNPNLGLLHTLATICEAHEARYAQECANSPSYNNTNARNSHTIGKLANLLRENDDFY 95
Query: 92 HMYTADIQIDAKVQCGVRSAAFAII 18
+ D VRSAA ++
Sbjct: 96 ELVFCKFLSDNSYSAAVRSAAARLL 120
>04_03_0535 - 16850704-16853001,16854055-16854115,16854228-16854323,
16854394-16854521,16855016-16855067,16855182-16855274,
16855473-16855590,16856456-16856609,16857512-16857643,
16859136-16859216,16859353-16859507,16860118-16860343,
16860423-16860507,16860593-16860689,16861785-16861949,
16862046-16862121,16863041-16863103,16863193-16863359,
16863495-16863669,16863743-16863835,16864694-16864810,
16865589-16865778,16866092-16866126
Length = 1618
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +3
Query: 12 IVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASGRCLARIWR 167
+ + +RGR AL ++ + E + L CA GRCL W+
Sbjct: 953 VAAHARRGRVRDALGTAARMHRSAAGLDEATYAS--ALGACARGRCLRMGWQ 1002
>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
16552038-16552076,16553151-16553272,16553531-16553677,
16554097-16554186,16554274-16554398,16554567-16554772,
16554951-16555075,16555528-16555722,16556295-16556337,
16556762-16557267,16558198-16558570,16559772-16560062,
16560132-16561101,16561196-16561892,16562378-16562658,
16562731-16563400,16563860-16564034,16565103-16565659
Length = 2204
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 102 CFLSHVHRRHTNRRKGAMRRAFGRVCN 22
C LS + RRH N G F VC+
Sbjct: 1167 CTLSAILRRHGNGELGMSSETFALVCS 1193
>03_03_0229 -
15612829-15612897,15612982-15613083,15613503-15613553,
15613637-15613706,15613816-15613984,15614217-15614326,
15614443-15614510,15615412-15615480,15616649-15616692,
15616803-15617050,15617620-15617633
Length = 337
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 51 LHLCVDLYVGGVHVKENKVINHY 119
LH C+ Y+ VK +K + HY
Sbjct: 285 LHFCLPYYIPNGFVKAHKNLQHY 307
>02_02_0186 +
7594197-7594281,7594409-7594513,7595062-7595238,
7595716-7595886,7596198-7596289,7596302-7596407,
7597516-7597601,7597861-7598501,7599065-7599107
Length = 501
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 186 DVKLCVIAIFVRGNVRLRR 130
DVK+C + + RGN LR+
Sbjct: 209 DVKMCSLLVIDRGNAALRK 227
>01_06_0617 - 30643177-30643506
Length = 109
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 77 RRCTCERKQSYQSLPAELLRKRTLPR 154
RRC C RK++ A +RK PR
Sbjct: 50 RRCRCRRKEAEVGEAAADVRKAATPR 75
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 243 ATQHDKNQQSRA--ERPGKYNDVKLCVIAIFVRGNVRLRRSSAGN 115
A +H+ + +A E+ K ND L V + + GN+ R SSA N
Sbjct: 180 AEEHNIKWEPKAFEEKLPKQNDDLLHVTSTYPGGNIPTRGSSASN 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,102,268
Number of Sequences: 37544
Number of extensions: 124286
Number of successful extensions: 442
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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