Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10i07
         (260 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M96388-1|AAA28662.1| 3712|Drosophila melanogaster laminin A chai...    29   0.90 
L07288-1|AAC37178.1| 3712|Drosophila melanogaster laminin A prot...    29   0.90 
AE014296-1101|AAF50672.2| 3712|Drosophila melanogaster CG10236-P...    29   0.90 
AE013599-527|AAF59178.2|  897|Drosophila melanogaster CG30377-PA...    26   6.3  
AY089418-1|AAL90156.1|  149|Drosophila melanogaster AT24188p pro...    26   8.3  
AE014297-1896|AAF55096.2| 1010|Drosophila melanogaster CG7362-PA...    26   8.3  
AE013599-2726|AAF57669.1|  149|Drosophila melanogaster CG5327-PA...    26   8.3  

>M96388-1|AAA28662.1| 3712|Drosophila melanogaster laminin A chain
           protein.
          Length = 3712

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +2

Query: 68  FVCRRCTCERKQSYQSLPAELLRK-RTLPR-TNMAMTHSLTSLYFP 199
           F C+ C+C+   S+QS+  ++  + +  PR T +A T  LT+ +FP
Sbjct: 780 FGCKDCSCDVGGSWQSVCDKISGQCKCHPRITGLACTQPLTTHFFP 825


>L07288-1|AAC37178.1| 3712|Drosophila melanogaster laminin A
           protein.
          Length = 3712

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +2

Query: 68  FVCRRCTCERKQSYQSLPAELLRK-RTLPR-TNMAMTHSLTSLYFP 199
           F C+ C+C+   S+QS+  ++  + +  PR T +A T  LT+ +FP
Sbjct: 780 FGCKDCSCDVGGSWQSVCDKISGQCKCHPRITGLACTQPLTTHFFP 825


>AE014296-1101|AAF50672.2| 3712|Drosophila melanogaster CG10236-PA
           protein.
          Length = 3712

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +2

Query: 68  FVCRRCTCERKQSYQSLPAELLRK-RTLPR-TNMAMTHSLTSLYFP 199
           F C+ C+C+   S+QS+  ++  + +  PR T +A T  LT+ +FP
Sbjct: 780 FGCKDCSCDVGGSWQSVCDKISGQCKCHPRITGLACTQPLTTHFFP 825


>AE013599-527|AAF59178.2|  897|Drosophila melanogaster CG30377-PA
           protein.
          Length = 897

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 233 MIRTSSHVLNVQENIMTSNCASSP 162
           +I  +   L+V+E IMT  CAS P
Sbjct: 659 LISANGRPLSVREQIMTIRCASDP 682


>AY089418-1|AAL90156.1|  149|Drosophila melanogaster AT24188p
           protein.
          Length = 149

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 96  LSHVHRRHTNRRKGAMRRAFGRVCNN*R*TLE 1
           +  ++R H  R +  M R   R C++ R TLE
Sbjct: 17  IEDMYRTHLRRMQSTMHRCAARCCDDDRGTLE 48


>AE014297-1896|AAF55096.2| 1010|Drosophila melanogaster CG7362-PA
           protein.
          Length = 1010

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 191 IMTSNCASSPYSCEATSACAEAQQVMIDNFVFFHMY 84
           + T+ C+S P SC   ++    Q    D F+ F++Y
Sbjct: 64  VWTNICSSKPISCPFPTSHVARQPQNSDFFIKFYIY 99


>AE013599-2726|AAF57669.1|  149|Drosophila melanogaster CG5327-PA
           protein.
          Length = 149

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 96  LSHVHRRHTNRRKGAMRRAFGRVCNN*R*TLE 1
           +  ++R H  R +  M R   R C++ R TLE
Sbjct: 17  IEDMYRTHLRRMQSTMHRCAARCCDDDRGTLE 48


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,021,672
Number of Sequences: 53049
Number of extensions: 214640
Number of successful extensions: 776
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 24,988,368
effective HSP length: 65
effective length of database: 21,540,183
effective search space used: 452343843
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)