Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10i07
(260 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48638-8|CAA88568.1| 237|Caenorhabditis elegans Hypothetical pr... 29 0.60
Z50070-4|CAA90394.2| 172|Caenorhabditis elegans Hypothetical pr... 28 1.1
U97009-9|AAC69027.1| 225|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z81517-5|CAB04212.1| 685|Caenorhabditis elegans Hypothetical pr... 26 3.2
AF125963-3|AAD14744.2| 356|Caenorhabditis elegans Serpentine re... 26 3.2
Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical p... 26 4.2
Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical p... 26 4.2
AC006769-15|AAF60587.1| 337|Caenorhabditis elegans Serpentine r... 26 4.2
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical p... 25 5.6
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 25 5.6
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 25 5.6
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 25 5.6
AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical ... 25 5.6
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 25 5.6
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 25 5.6
U50199-2|AAP46272.1| 169|Caenorhabditis elegans Pharyngeal enha... 25 7.4
U50199-1|AAA91262.1| 427|Caenorhabditis elegans Pharyngeal enha... 25 7.4
AF160187-1|AAD42897.1| 425|Caenorhabditis elegans pharyngeal en... 25 7.4
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 25 7.4
AF043697-4|AAO38636.1| 431|Caenorhabditis elegans Hypothetical ... 25 7.4
AF043697-3|AAB97558.1| 548|Caenorhabditis elegans Hypothetical ... 25 7.4
AF039710-3|AAD32272.1| 347|Caenorhabditis elegans Serpentine re... 25 7.4
Z95310-2|CAB08563.1| 394|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z83104-6|CAB05479.1| 394|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical pr... 25 9.8
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 25 9.8
AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical ... 25 9.8
AF016450-13|AAB65988.2| 472|Caenorhabditis elegans Hypothetical... 25 9.8
AF003137-3|AAB93640.1| 625|Caenorhabditis elegans Hypothetical ... 25 9.8
>Z48638-8|CAA88568.1| 237|Caenorhabditis elegans Hypothetical
protein ZK892.6 protein.
Length = 237
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 131 LRKRTLPRTNMAMTHSLTSLYFPGRSARDCWFL 229
L+K P+TN M H L + G+S++ C F+
Sbjct: 21 LKKGNFPKTNDGMQHDLVNDVLGGKSSKYCPFI 53
>Z50070-4|CAA90394.2| 172|Caenorhabditis elegans Hypothetical
protein F43G6.3 protein.
Length = 172
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 142 DVASHEYGDDAQFDVIIFS 198
D++ +E GDDA FDV+I S
Sbjct: 11 DLSDNELGDDASFDVLISS 29
>U97009-9|AAC69027.1| 225|Caenorhabditis elegans Hypothetical
protein T19H12.2 protein.
Length = 225
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 142 DVASHEYGDDAQFDVII 192
D++ +E GDDA FDV+I
Sbjct: 66 DLSDNELGDDASFDVLI 82
>Z81517-5|CAB04212.1| 685|Caenorhabditis elegans Hypothetical
protein F28B1.5 protein.
Length = 685
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -2
Query: 184 RQTVRHRHIRARQRPLAQKLSR**LITLFSFTCTPPTYKSTQRCNAACVRP 32
R +V + I+ RP+ K + + +FS + P Y+S Q + C+ P
Sbjct: 350 RPSVFYDSIKCTMRPICSKYDQD--LVIFSMSHDPIVYRSGQTSDIRCLPP 398
>AF125963-3|AAD14744.2| 356|Caenorhabditis elegans Serpentine
receptor, class h protein10 protein.
Length = 356
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 143 TLPRTNMAMTHSLTSLYFP-GRSARDCWFLSCCVARYQS 256
T P N A + L S++FP S RD FLS +R+QS
Sbjct: 313 TRPLLNFARS-KLHSIFFPRNMSIRDVSFLSSSQSRHQS 350
>Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical
protein R10E11.3b protein.
Length = 414
Score = 25.8 bits (54), Expect = 4.2
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = -1
Query: 254 IDNEQRNMIRTSSHVLNVQENIMTSNCASSPYSCEATSACAEAQQVM 114
ID EQ I SH L V T C Y CE S+ EAQ+ M
Sbjct: 217 IDVEQNTSI---SHCLRVFSETETL-CGDQKYFCETCSSKQEAQKRM 259
>Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical
protein R10E11.3a protein.
Length = 426
Score = 25.8 bits (54), Expect = 4.2
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = -1
Query: 254 IDNEQRNMIRTSSHVLNVQENIMTSNCASSPYSCEATSACAEAQQVM 114
ID EQ I SH L V T C Y CE S+ EAQ+ M
Sbjct: 229 IDVEQNTSI---SHCLRVFSETETL-CGDQKYFCETCSSKQEAQKRM 271
>AC006769-15|AAF60587.1| 337|Caenorhabditis elegans Serpentine
receptor, class j protein19 protein.
Length = 337
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -1
Query: 215 HVLNVQENIMTSNCASSPYSCEATSACAEAQQVMIDNFVFFHMYT-ADIQIDA-KVQCGV 42
++++ ++++ N Y + CA A ++I VF++ YT + +DA + + G
Sbjct: 27 YLIHSSKHVLFGNYRYLSYFFAIFNLCASAADLLIPVAVFYYRYTFVTLVVDAMRSEQGE 86
Query: 41 RSAAF 27
S AF
Sbjct: 87 ASIAF 91
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 74 CRRCTCERKQSYQSL 118
CR C CE KQ + SL
Sbjct: 538 CRHCFCENKQEFCSL 552
>Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 74 CRRCTCERKQSYQSL 118
CR C CE KQ + SL
Sbjct: 472 CRHCFCENKQEFCSL 486
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 74 CRRCTCERKQSYQSL 118
CR C CE KQ + SL
Sbjct: 472 CRHCFCENKQEFCSL 486
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 74 CRRCTCERKQSYQSL 118
CR C CE KQ + SL
Sbjct: 538 CRHCFCENKQEFCSL 552
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 74 CRRCTCERKQSYQSL 118
CR C CE KQ + SL
Sbjct: 472 CRHCFCENKQEFCSL 486
>AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 74 CRRCTCERKQSYQSL 118
CR C CE KQ + SL
Sbjct: 472 CRHCFCENKQEFCSL 486
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 74 CRRCTCERKQSYQSL 118
CR C CE KQ + SL
Sbjct: 472 CRHCFCENKQEFCSL 486
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 74 CRRCTCERKQSYQSL 118
CR C CE KQ + SL
Sbjct: 472 CRHCFCENKQEFCSL 486
>U50199-2|AAP46272.1| 169|Caenorhabditis elegans Pharyngeal
enhancer binding protein1, isoform b protein.
Length = 169
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 32 RPNARRIAPLRRFVCRRCTCERK 100
R N +IAP R F RC C +K
Sbjct: 69 RYNIYQIAPERNFKSWRCVCAKK 91
>U50199-1|AAA91262.1| 427|Caenorhabditis elegans Pharyngeal
enhancer binding protein1, isoform a protein.
Length = 427
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 32 RPNARRIAPLRRFVCRRCTCERK 100
R N +IAP R F RC C +K
Sbjct: 69 RYNIYQIAPERNFKSWRCVCAKK 91
>AF160187-1|AAD42897.1| 425|Caenorhabditis elegans pharyngeal
enhancer binding protein-1 protein.
Length = 425
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 32 RPNARRIAPLRRFVCRRCTCERK 100
R N +IAP R F RC C +K
Sbjct: 67 RYNIYQIAPERNFKSWRCVCAKK 89
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -1
Query: 176 CASSPYSCEATSACAEAQ 123
CAS+PY C T E Q
Sbjct: 1230 CASAPYGCPCTGDLTETQ 1247
>AF043697-4|AAO38636.1| 431|Caenorhabditis elegans Hypothetical
protein F56C11.6b protein.
Length = 431
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +3
Query: 12 IVNYCKRG-RTHAALHLCVDLYVGGVHVKENKVINHYLLSF 131
I C G R L + D Y GVH K+++ H ++ F
Sbjct: 242 IFKECDYGERADDVLQMVYDFYFKGVHPKDHEKNMHQIVKF 282
>AF043697-3|AAB97558.1| 548|Caenorhabditis elegans Hypothetical
protein F56C11.6a protein.
Length = 548
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +3
Query: 12 IVNYCKRG-RTHAALHLCVDLYVGGVHVKENKVINHYLLSF 131
I C G R L + D Y GVH K+++ H ++ F
Sbjct: 359 IFKECDYGERADDVLQMVYDFYFKGVHPKDHEKNMHQIVKF 399
>AF039710-3|AAD32272.1| 347|Caenorhabditis elegans Serpentine
receptor, class h protein100 protein.
Length = 347
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 178 FDVIIFSWTFST*LLVLIMLRCSL 249
F V +FSW +L LI+L CSL
Sbjct: 96 FTVGVFSWLGIPIILELILLTCSL 119
>Z95310-2|CAB08563.1| 394|Caenorhabditis elegans Hypothetical
protein F09B12.5 protein.
Length = 394
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -1
Query: 179 NCASSPYSCEATSACAEAQQVMIDNF 102
NCAS Y C+++ C + ++ F
Sbjct: 147 NCASEDYICKSSGLCLKPNKICDGKF 172
>Z83104-6|CAB05479.1| 394|Caenorhabditis elegans Hypothetical
protein F09B12.5 protein.
Length = 394
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -1
Query: 179 NCASSPYSCEATSACAEAQQVMIDNF 102
NCAS Y C+++ C + ++ F
Sbjct: 147 NCASEDYICKSSGLCLKPNKICDGKF 172
>Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical protein
F29C12.3 protein.
Length = 1631
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 45 AALHLCVDL--YVGGVHVKENKVINHYLLSFCASGRCLARI 161
A LHL L + G H+ ++ + LLS C +G+C I
Sbjct: 1069 APLHLFAALGSHETGRHILIDENVAEDLLSICKTGKCFEEI 1109
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 86 TCERKQSYQSLPAELLRKRTLPRTNMAMTHS-LTSLYFPGRSARD 217
T ERKQ ++LP L + L +H+ + S PG +A D
Sbjct: 174 TAERKQRGKNLPEGLAKTEELAELKQTASHTGIHSTGTPGITALD 218
>AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical
protein F29C12.3 protein.
Length = 1631
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 45 AALHLCVDL--YVGGVHVKENKVINHYLLSFCASGRCLARI 161
A LHL L + G H+ ++ + LLS C +G+C I
Sbjct: 1069 APLHLFAALGSHETGRHILIDENVAEDLLSICKTGKCFEEI 1109
>AF016450-13|AAB65988.2| 472|Caenorhabditis elegans Hypothetical
protein B0238.9 protein.
Length = 472
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 101 VFFHMYTADIQIDAKVQC 48
VF H Y AD QID +C
Sbjct: 244 VFHHDYDADDQIDTDFEC 261
>AF003137-3|AAB93640.1| 625|Caenorhabditis elegans Hypothetical
protein C27A12.2 protein.
Length = 625
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 90 HVHRRHTNRRKGAMRRAFGRV 28
HV ++H N++K R GRV
Sbjct: 527 HVEKKHLNKKKYVCSRGCGRV 547
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,173,087
Number of Sequences: 27780
Number of extensions: 111207
Number of successful extensions: 384
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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