Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10i07
         (260 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   3.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   3.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   4.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    20   4.4  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    19   7.6  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    19   7.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   7.6  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 152 RTNMAMTHSLTSLYFP 199
           +TN+ +TH+ + LY P
Sbjct: 156 QTNVVVTHNGSCLYVP 171


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 152 RTNMAMTHSLTSLYFP 199
           +TN+ +TH+ + LY P
Sbjct: 156 QTNVVVTHNGSCLYVP 171


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +3

Query: 18  NYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASGRCL 152
           +YC    TH    +   + V   +V+E+  +   LL+F     CL
Sbjct: 360 DYCNIVATHLVCGILGSILVPFFYVQEDDDVKLVLLNFGWQMICL 404


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 237 QHDKNQQSRAE 205
           QH KN+Q R E
Sbjct: 58  QHSKNEQQRKE 68


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +3

Query: 57  LCVDLYVGGVHVKENKVINHYLLSFC 134
           LC+ L VG   +     + H   +FC
Sbjct: 20  LCIQLVVGPYVIGLMNTMTHTTNAFC 45


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +3

Query: 57  LCVDLYVGGVHVKENKVINHYLLSFC 134
           LC+ L VG   +     + H   +FC
Sbjct: 19  LCIQLVVGPYVIGLMNTMTHTTNAFC 44


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 222 QQSRAERPGKYNDVKL 175
           +++  + PG Y D+KL
Sbjct: 713 KKAAGDTPGDYTDLKL 728


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,853
Number of Sequences: 438
Number of extensions: 1224
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)