Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10i04
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    27   1.6  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    27   2.1  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.5  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   6.5  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    25   8.6  

>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 272 EAISAYQSYQHSITSLQSTRGHIEYETIVEKSTFFLFP 385
           E ++A+   +     LQ  +   E+ETI+   +F++ P
Sbjct: 74  ELLNAFMGMEGVFVHLQDMKASSEFETIIMPPSFYILP 111


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 288 TSPTSTPLPVFSLRVATLSMKQLSKRVLFFCFLPKLIALRGFFS 419
           + P  +   V++ RVA   ++QL + V  F F PKL+   GF S
Sbjct: 7   SEPNHSCKVVYASRVAETFVEQLKQHVNLFEFAPKLV---GFLS 47


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 275 AISAYQSYQHSITSLQ--STRGHIEYETIVEKSTF 373
           A+  Y SY+H ITS++  S+   IEY +    +TF
Sbjct: 396 AVRLYSSYKHYITSMKKGSSLLTIEYISSTAPNTF 430


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 221 SSLVIKHSKEYYNATQLDI--DKGVPLWFR*SDDVVFVTIRALNLR 90
           SSL I   +  Y   QL I  D  V  W +  DD +  T+R+LN R
Sbjct: 385 SSLSICEDRLRYTLKQLGILYDGDVD-WSKRQDDEISATLRSLNAR 429


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 446 VSSPTS*GYAEKTSQGYQLRQETKK 372
           +  PT  GY EK S+ YQ     KK
Sbjct: 192 IGEPTERGYFEKLSKAYQSLMTGKK 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,959,930
Number of Sequences: 5004
Number of extensions: 38906
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)