Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10h21
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1472 - 26753070-26753177,26753254-26753531,26753691-267538... 43 3e-04
06_01_0499 - 3581145-3582425 30 1.8
08_02_0410 - 16842306-16842950,16844994-16845182 29 4.1
04_03_0865 + 20402711-20404057 29 4.1
08_02_0800 + 21330446-21330722,21331040-21331182,21331925-213319... 29 5.4
08_02_0453 - 17331534-17331656,17332288-17332340,17332612-173327... 29 5.4
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 28 9.5
>07_03_1472 -
26753070-26753177,26753254-26753531,26753691-26753865,
26754974-26755468
Length = 351
Score = 42.7 bits (96), Expect = 3e-04
Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 8/194 (4%)
Frame = -2
Query: 669 RAVAVEWDSQNETISQATMHLTALCNTALDNPGKLTSHDIVNYLLEYYPTDTLLFYSXXX 490
R + W + + I TM L L TAL+ LT I++ L++ + D + S
Sbjct: 157 RLLKFGWKMEADGIRPFTMPLMKLACTALERV-PLTRKKIIDNLMKKFHQDLVFCRSPDD 215
Query: 489 XXXXXXXXR----KWTPILDWFQKTFNVKQELANSI----QPPPVFTETRAVLARHFLSY 334
+ K PILDW F K + S Q + VL ++ +
Sbjct: 216 NELTVGVYQRQKEKIDPILDWVNTEFGFKPVVYTSFFGGKQDEGLANAVETVL-KNTTDF 274
Query: 333 DFAALTAINFGVEALKSPILMLACMERRXXXXXXXXXXXXXXEYQLERWGRVPWAHGLSQ 154
+ A++ A+ A S ++ LA + ++Q++RWG V H +
Sbjct: 275 ELASIDAM---AAAAHSLVIPLAIFRGKLGIEQAIELIRLEEDHQVDRWGLVEGGHDVDI 331
Query: 153 ADLTARVSAALLLV 112
ADL ++S+A++ +
Sbjct: 332 ADLKVQMSSAVVFL 345
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -2
Query: 753 NKWEVTLDHRRLKTPNGNVLTVGNEPLARAVAVEWDSQ 640
N W V LD+R LK+P L + + LA A+A EW+ Q
Sbjct: 98 NGWSVMLDYRTLKSPAKRPLKLQSRTLAMAIAAEWEYQ 135
>06_01_0499 - 3581145-3582425
Length = 426
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 59 CESWADLVLMACFSVAQCTRSRAADTRAVRSAWLSPCAHGTRPQR 193
C+SW +V CF+ Q S AA+ R + L G RPQR
Sbjct: 57 CKSWRAMVADPCFARLQLRHSTAAERRRHPPSMLVLPWWGWRPQR 101
>08_02_0410 - 16842306-16842950,16844994-16845182
Length = 277
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +3
Query: 105 RSVRGAGRRTRAPSGRPGSARAPTARGPSA 194
R V G GRR R G PG A A A SA
Sbjct: 140 RGVGGGGRRRRREGGEPGLAVAAAAASASA 169
>04_03_0865 + 20402711-20404057
Length = 448
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 82 FDGMFLSSAVYE-EQGGGHARRQVGLAQPVRPRHAAPAL 195
FD L+S E + G H +R VG +P P+ A PA+
Sbjct: 253 FDPELLASIERELSEEGAHIKRMVGSEKPKHPKAAPPAM 291
>08_02_0800 +
21330446-21330722,21331040-21331182,21331925-21331978,
21332065-21332130,21333075-21333096,21333347-21333460,
21334153-21334278,21334891-21334925,21335709-21335809,
21335911-21335971,21336482-21336572,21337657-21337842,
21338755-21338922,21339006-21339208,21339313-21339431,
21339910-21339928,21340092-21340130,21340238-21340465,
21340987-21341088,21341842-21341889,21343622-21343765,
21343873-21343968,21344224-21344325,21345188-21345274
Length = 876
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = -2
Query: 690 VGNEPLARAVAVEWDSQNETISQATMHLTALCNTALDNPGKLTSHDIVNYLLEYYPTDTL 511
VG +PL + +AV+W +E +H +L + + K+ ++N + P L
Sbjct: 686 VGGDPLLKLIAVDWFKADERFDSVALHPKSLVQS--EAAKKIPFILVINLQVPAKPNYNL 743
Query: 510 LFY 502
+ Y
Sbjct: 744 VMY 746
>08_02_0453 -
17331534-17331656,17332288-17332340,17332612-17332704,
17332747-17332903,17333246-17333384,17333467-17333529,
17337990-17338071,17338167-17338245,17338853-17339032,
17340010-17340272,17340486-17340622,17341662-17341729
Length = 478
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = +3
Query: 201 DILLQVLLTIQLPRVQRGAPY----TPTLRSVTLMPRH 302
+I++ + LT+ L R+ RGAP T + + +MPRH
Sbjct: 272 NIIMDMPLTVDLTRILRGAPLIDFETESYARIGVMPRH 309
>06_03_1190 -
28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 132 TRAPSGRPGSARAPTARGPSAPADILLQVLLTIQLPRVQRGAPYTPTLRSVTLMPRHR 305
T+ P R G A G A +L ++ + L + GA + PTLRS L + R
Sbjct: 3 TKPPQSRGGGGGGGGALGRRGFAALLAAAVIALALLCLFYGAAFAPTLRSRRLPLQRR 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,553,896
Number of Sequences: 37544
Number of extensions: 419440
Number of successful extensions: 1419
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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