Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10h21
(772 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC032126-1|AAH32126.1| 289|Homo sapiens ATP synthase mitochondr... 174 3e-43
BC004114-1|AAH04114.1| 289|Homo sapiens ATP synthase mitochondr... 174 3e-43
AK128275-1|BAC87363.1| 909|Homo sapiens protein ( Homo sapiens ... 35 0.28
BT007367-1|AAP36031.1| 868|Homo sapiens programmed cell death 6... 32 2.0
BC068454-1|AAH68454.1| 873|Homo sapiens PDCD6IP protein protein. 32 2.0
BC020066-1|AAH20066.1| 868|Homo sapiens programmed cell death 6... 32 2.0
AK002122-1|BAA92092.1| 617|Homo sapiens protein ( Homo sapiens ... 32 2.0
AF349951-1|AAK20398.1| 868|Homo sapiens HP95 protein. 32 2.0
AF250394-1|AAQ14260.1| 868|Homo sapiens dopamine receptor inter... 32 2.0
AF151793-1|AAF08220.1| 868|Homo sapiens ALG-2 interacting prote... 32 2.0
AB037796-1|BAA92613.1| 546|Homo sapiens KIAA1375 protein protein. 32 2.0
AY078498-1|AAL85487.2| 1507|Homo sapiens zinc finger 298 protein. 30 8.0
AP001745-1|BAA95527.1| 847|Homo sapiens ZNF298 protein. 30 8.0
AF276513-1|AAF78093.1| 951|Homo sapiens PR-domain zinc finger p... 30 8.0
>BC032126-1|AAH32126.1| 289|Homo sapiens ATP synthase mitochondrial
F1 complex assembly factor 2 protein.
Length = 289
Score = 174 bits (424), Expect = 3e-43
Identities = 84/232 (36%), Positives = 124/232 (53%)
Frame = -2
Query: 771 AVIQNDNKWEVTLDHRRLKTPNGNVLTVGNEPLARAVAVEWDSQNETISQATMHLTALCN 592
++ Q + +E+ LDHR+LKTP + TV +E LA AVA EWDSQ +TI TMHLT LCN
Sbjct: 54 SITQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKYYTMHLTTLCN 113
Query: 591 TALDNPGKLTSHDIVNYLLEYYPTDTLLFYSXXXXXXXXXXXRKWTPILDWFQKTFNVKQ 412
T+LDNP + ++ +++ TDT+ + +W PI++W +K + V+
Sbjct: 114 TSLDNPTQRNKDQLIRAAVKFLDTDTICYRVEEPETLVELQRNEWDPIIEWAEKRYGVEI 173
Query: 411 ELANSIQPPPVFTETRAVLARHFLSYDFAALTAINFGVEALKSPILMLACMERRXXXXXX 232
+ SI P + +TR VL H SY+ AL I F LKS +L L ++ R
Sbjct: 174 SSSTSIMGPSIPAKTREVLVSHLASYNTWALQGIEFVAAQLKSMVLTLGLIDLRLTVEQA 233
Query: 231 XXXXXXXXEYQLERWGRVPWAHGLSQADLTARVSAALLLVHCATEKHAIKTK 76
EYQ+++WG + WAH +L AR +A L +H +E +K K
Sbjct: 234 VLLSRLEEEYQIQKWGNIEWAHDYELQELRARTAAGTLFIHLCSESTTVKHK 285
>BC004114-1|AAH04114.1| 289|Homo sapiens ATP synthase mitochondrial
F1 complex assembly factor 2 protein.
Length = 289
Score = 174 bits (424), Expect = 3e-43
Identities = 84/232 (36%), Positives = 124/232 (53%)
Frame = -2
Query: 771 AVIQNDNKWEVTLDHRRLKTPNGNVLTVGNEPLARAVAVEWDSQNETISQATMHLTALCN 592
++ Q + +E+ LDHR+LKTP + TV +E LA AVA EWDSQ +TI TMHLT LCN
Sbjct: 54 SITQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATEWDSQQDTIKYYTMHLTTLCN 113
Query: 591 TALDNPGKLTSHDIVNYLLEYYPTDTLLFYSXXXXXXXXXXXRKWTPILDWFQKTFNVKQ 412
T+LDNP + ++ +++ TDT+ + +W PI++W +K + V+
Sbjct: 114 TSLDNPTQRNKDQLIRAAVKFLDTDTICYRVEEPETLVELQRNEWDPIIEWAEKRYGVEI 173
Query: 411 ELANSIQPPPVFTETRAVLARHFLSYDFAALTAINFGVEALKSPILMLACMERRXXXXXX 232
+ SI P + +TR VL H SY+ AL I F LKS +L L ++ R
Sbjct: 174 SSSTSIMGPSIPAKTREVLVSHLASYNTWALQGIEFVAAQLKSMVLTLGLIDLRLTVEQA 233
Query: 231 XXXXXXXXEYQLERWGRVPWAHGLSQADLTARVSAALLLVHCATEKHAIKTK 76
EYQ+++WG + WAH +L AR +A L +H +E +K K
Sbjct: 234 VLLSRLEEEYQIQKWGNIEWAHDYELQELRARTAAGTLFIHLCSESTTVKHK 285
>AK128275-1|BAC87363.1| 909|Homo sapiens protein ( Homo sapiens
cDNA FLJ46412 fis, clone THYMU3011534. ).
Length = 909
Score = 35.1 bits (77), Expect = 0.28
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -2
Query: 747 WEVTLDHRRLKTPNGNVLTVGNEPLARAVAVEWDSQNETI--SQATMHLTALCNTALDN 577
W LD+R L P ++LTV ++ +VA++ S I +A +HL+ CNT N
Sbjct: 74 WSCALDYRPLYLPIRSLLTVETFSVSSSVALDKSSSTLRIILDEAALHLSDKCNTVTIN 132
>BT007367-1|AAP36031.1| 868|Homo sapiens programmed cell death 6
interacting protein protein.
Length = 868
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +3
Query: 117 GAGRRTRAPSGRPGSARAPTARGPSAP 197
GAG APS PGSA P A+GP P
Sbjct: 778 GAGTAAPAPSQTPGSAPPPQAQGPPYP 804
>BC068454-1|AAH68454.1| 873|Homo sapiens PDCD6IP protein protein.
Length = 873
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +3
Query: 117 GAGRRTRAPSGRPGSARAPTARGPSAP 197
GAG APS PGSA P A+GP P
Sbjct: 783 GAGTAAPAPSQTPGSAPPPQAQGPPYP 809
>BC020066-1|AAH20066.1| 868|Homo sapiens programmed cell death 6
interacting protein protein.
Length = 868
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +3
Query: 117 GAGRRTRAPSGRPGSARAPTARGPSAP 197
GAG APS PGSA P A+GP P
Sbjct: 778 GAGTAAPAPSQTPGSAPPPQAQGPPYP 804
>AK002122-1|BAA92092.1| 617|Homo sapiens protein ( Homo sapiens
cDNA FLJ11260 fis, clone PLACE1009060, weakly similar to
BRO1 PROTEIN. ).
Length = 617
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +3
Query: 117 GAGRRTRAPSGRPGSARAPTARGPSAP 197
GAG APS PGSA P A+GP P
Sbjct: 527 GAGTAAPAPSQTPGSAPPPQAQGPPYP 553
>AF349951-1|AAK20398.1| 868|Homo sapiens HP95 protein.
Length = 868
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +3
Query: 117 GAGRRTRAPSGRPGSARAPTARGPSAP 197
GAG APS PGSA P A+GP P
Sbjct: 778 GAGTAAPAPSQTPGSAPPPQAQGPPYP 804
>AF250394-1|AAQ14260.1| 868|Homo sapiens dopamine receptor
interacting protein 4 protein.
Length = 868
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +3
Query: 117 GAGRRTRAPSGRPGSARAPTARGPSAP 197
GAG APS PGSA P A+GP P
Sbjct: 778 GAGTAAPAPSQTPGSAPPPQAQGPPYP 804
>AF151793-1|AAF08220.1| 868|Homo sapiens ALG-2 interacting protein
1 protein.
Length = 868
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +3
Query: 117 GAGRRTRAPSGRPGSARAPTARGPSAP 197
GAG APS PGSA P A+GP P
Sbjct: 778 GAGTAAPAPSQTPGSAPPPQAQGPPYP 804
>AB037796-1|BAA92613.1| 546|Homo sapiens KIAA1375 protein protein.
Length = 546
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +3
Query: 117 GAGRRTRAPSGRPGSARAPTARGPSAP 197
GAG APS PGSA P A+GP P
Sbjct: 456 GAGTAAPAPSQTPGSAPPPQAQGPPYP 482
>AY078498-1|AAL85487.2| 1507|Homo sapiens zinc finger 298 protein.
Length = 1507
Score = 30.3 bits (65), Expect = 8.0
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = +3
Query: 105 RSVRGAGRRTRAPSG----RPGSARAPTARG--PSAPADILLQVLLTIQLPRVQRGAPYT 266
RS G R P G RP + R P G AP D+++ +Q RV RG P+T
Sbjct: 69 RSRSGIALRAARPPGSSPPRPAAPRPPPPGGVVAEAPGDVVIP-RPRVQPMRVARGGPWT 127
Query: 267 P 269
P
Sbjct: 128 P 128
>AP001745-1|BAA95527.1| 847|Homo sapiens ZNF298 protein.
Length = 847
Score = 30.3 bits (65), Expect = 8.0
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = +3
Query: 105 RSVRGAGRRTRAPSG----RPGSARAPTARG--PSAPADILLQVLLTIQLPRVQRGAPYT 266
RS G R P G RP + R P G AP D+++ +Q RV RG P+T
Sbjct: 69 RSRSGIALRAARPPGSSPPRPAAPRPPPPGGVVAEAPGDVVIP-RPRVQPMRVARGGPWT 127
Query: 267 P 269
P
Sbjct: 128 P 128
>AF276513-1|AAF78093.1| 951|Homo sapiens PR-domain zinc finger
protein 15 protein.
Length = 951
Score = 30.3 bits (65), Expect = 8.0
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = +3
Query: 105 RSVRGAGRRTRAPSG----RPGSARAPTARG--PSAPADILLQVLLTIQLPRVQRGAPYT 266
RS G R P G RP + R P G AP D+++ +Q RV RG P+T
Sbjct: 69 RSRSGIALRAARPPGSSPPRPAAPRPPPPGGVVAEAPGDVVIP-RPRVQPMRVARGGPWT 127
Query: 267 P 269
P
Sbjct: 128 P 128
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,475,787
Number of Sequences: 237096
Number of extensions: 2399974
Number of successful extensions: 11155
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11146
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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