Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h21
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-30|CAB55134.2|  269|Caenorhabditis elegans Hypothetical...   123   1e-28
Z98262-2|CAD44155.1|  484|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z71260-3|CAD44115.1|  484|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z70756-4|CAA94788.1|  290|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U64836-7|AAG24061.1|  674|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>AL117204-30|CAB55134.2|  269|Caenorhabditis elegans Hypothetical
           protein Y116A8C.27 protein.
          Length = 269

 Score =  123 bits (297), Expect = 1e-28
 Identities = 70/223 (31%), Positives = 106/223 (47%), Gaps = 1/223 (0%)
 Frame = -2

Query: 744 EVTLDHRRLKTPNGNVLTVGNEPLARAVAVEWDSQNETISQATMHLTALCNTALDNPGKL 565
           +V LDHR LKT  G VL + + PLA A+A EW SQ+E +    M LT L  TA DNP + 
Sbjct: 46  KVLLDHRVLKTQGGQVLKLDSYPLALAIAEEWSSQDEFLQLGQMRLTGLAFTAQDNPLEQ 105

Query: 564 TSHDIVNYLLEYYPTDTLLFYSXXXXXXXXXXXRKWTPILDWFQKTFNVKQELANSIQPP 385
           T+  I   +L+Y   DT+LF++            KW P++        +K   + +I   
Sbjct: 106 TADTISQKILDYVEGDTVLFFNTESSKLHRYQEEKWAPLIKNLNNDLGIKVRPSENILDC 165

Query: 384 PVFTET-RAVLARHFLSYDFAALTAINFGVEALKSPILMLACMERRXXXXXXXXXXXXXX 208
            V +E  +  + R    ++F AL  + +  E++KS ++    +                 
Sbjct: 166 DVASENDKEKIDRWIRQHNFPALVGLQYATESVKSFVIAYNAIRHHIDPDTAIDAATLEQ 225

Query: 207 EYQLERWGRVPWAHGLSQADLTARVSAALLLVHCATEKHAIKT 79
             Q E WG V WAHG+ + +L  R+SAA L V+  +     KT
Sbjct: 226 RTQAETWGNVEWAHGIEREELMTRLSAACLFVYFNSNNFTSKT 268


>Z98262-2|CAD44155.1|  484|Caenorhabditis elegans Hypothetical
           protein F15C11.2b protein.
          Length = 484

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 111 VRGAGRRTRAPSGR-PGSARAPTARGPSAPADIL 209
           +R   R T AP+   P ++ APT  G  +PADIL
Sbjct: 78  IRNQARPTPAPAAATPTASSAPTMGGMGSPADIL 111


>Z71260-3|CAD44115.1|  484|Caenorhabditis elegans Hypothetical
           protein F15C11.2b protein.
          Length = 484

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 111 VRGAGRRTRAPSGR-PGSARAPTARGPSAPADIL 209
           +R   R T AP+   P ++ APT  G  +PADIL
Sbjct: 78  IRNQARPTPAPAAATPTASSAPTMGGMGSPADIL 111


>Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.6 protein.
          Length = 290

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 117 GAGRRTRAPSGRPGSARAPTARGPSAPA 200
           G G     P+G PG A AP A GP  P+
Sbjct: 124 GNGPCITCPAGAPGPAGAPGAPGPQGPS 151


>Z70756-4|CAA94788.1|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.4 protein.
          Length = 290

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 117 GAGRRTRAPSGRPGSARAPTARGPSAPA 200
           G G     P+G PG A AP A GP  P+
Sbjct: 124 GNGPCITCPAGAPGPAGAPGAPGPQGPS 151


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 135 RAPSGRPGSARAPTARGPSAPA--DILLQVLLTIQLPRVQRGAP 260
           RAP   P S++ P   G +AP   D+L ++L   +  + ++ AP
Sbjct: 818 RAPQALPTSSQTPPTSGSAAPPVDDLLSEILSGAKTTKTRKAAP 861


>Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical
           protein C09G5.4 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 135 RAPSGRPGSARAPTARGPSAP 197
           + P+G PG A AP A GP  P
Sbjct: 134 KCPAGSPGPAGAPGAPGPQGP 154


>U64836-7|AAG24061.1|  674|Caenorhabditis elegans Hypothetical
           protein F10G2.7 protein.
          Length = 674

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = -2

Query: 750 KWEVTLDHRRLKTPNGNVLTVGNEPLARA-VAVEWDSQNETISQATMHLTALCNTALDNP 574
           K+  ++ + +LKT + N++  GN+PL R    +    +++     +M + A+  + L N 
Sbjct: 411 KFFESMANEQLKTEDDNLICWGNQPLRRFWHTLIGTEEHDDKGHGSMEMLAV--SLLKNA 468

Query: 573 GKLTSHDIVNYLLEYYP 523
            ++   DI+N+    +P
Sbjct: 469 REVPKKDIINFDQSVHP 485


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,527,492
Number of Sequences: 27780
Number of extensions: 367532
Number of successful extensions: 1137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)