Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h17
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417...    29   3.5  
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389...    29   6.2  
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452...    28   8.2  
02_05_0683 + 30877731-30878243                                         28   8.2  

>12_01_0526 -
           4171313-4171417,4171514-4171597,4171688-4171758,
           4171814-4171891,4174482-4174569,4174659-4174850,
           4174939-4175802
          Length = 493

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
 Frame = -2

Query: 801 DYSSAWGAGARSAMLLVETPREAAVPPCAAPL-----DLPMSTLTKLNFTDYSVKVNKTY 637
           D +S  G+G    ++  +    AA P  AAP+     D+P+   + + FT     V+K  
Sbjct: 205 DLNSITGSGPGGRIVAKDVEAAAAAPKKAAPVAAARPDVPLG--STVPFTTMQGAVSKNM 262

Query: 636 PETSDQRDNRLNYEQALASVARLNYELE-QSVTGSGKLHYADQNRLAYDPAVDTMCAD 466
            E+      R+ Y     ++  L  +++ + VT S  L  A    L   P +++ C D
Sbjct: 263 VESLAVPTFRVGYTFTTDALDALYKKIKPKGVTMSALLAKATAMALVQHPVINSSCRD 320


>01_05_0329 -
           21037980-21038378,21038517-21038737,21038827-21038905,
           21039002-21039071,21039144-21039255,21039359-21039398,
           21039482-21039676,21039925-21040044,21040684-21041106,
           21042386-21042928
          Length = 733

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 426 YDIDFSDLVEGK--EGRRTWCPLRDRMPICSDRHSVAFPNQSPIA 554
           Y++ +S LVEG    GRR   PLR+ +  C  R     P   P+A
Sbjct: 57  YEVMYSTLVEGGGGRGRRGGGPLRETVAACDVRPRPPPPPPPPLA 101


>08_01_0519 -
           4518256-4519623,4520840-4521230,4521313-4521525,
           4521632-4521723,4522226-4522342,4522641-4522704,
           4523175-4523228,4523579-4523666,4523788-4524023,
           4525258-4525478,4525634-4525827,4525938-4525995,
           4526771-4526824,4526851-4527473,4527580-4527640,
           4528417-4528590,4528803-4529063,4529201-4529320,
           4529388-4530022,4530062-4530828,4530915-4531012,
           4531101-4531155,4531230-4531318
          Length = 2010

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -2

Query: 537 SGKLHYADQNRLAYDPAVDTMCADPPYLLQGQK--NQYHIPFKK 412
           +G  HY+    + YDP V++   + P+L  G++  + ++IP K+
Sbjct: 798 NGTRHYSTGVDMPYDPYVESKPGNQPFLSNGKRPSDFFNIPTKR 841


>02_05_0683 + 30877731-30878243
          Length = 170

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 698 GRSRGAAHGGTAASRGVSTSSIADR 772
           GR+R A  GG+ AS G ST+++A R
Sbjct: 118 GRARAAGPGGSGASDGGSTAAMAAR 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,632,612
Number of Sequences: 37544
Number of extensions: 305936
Number of successful extensions: 747
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)