Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10h17
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047655-7|AAC04404.1| 561|Caenorhabditis elegans Hypothetical ... 29 5.5
AF036699-1|AAB88362.1| 331|Caenorhabditis elegans Hypothetical ... 29 5.5
AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical... 28 7.3
AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical... 28 7.3
AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical... 28 7.3
AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conduct... 28 7.3
AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conduct... 28 7.3
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct... 28 7.3
U41274-2|AAD50512.1| 347|Caenorhabditis elegans Intracellular l... 28 9.6
AF101305-7|AAF98591.1| 279|Caenorhabditis elegans Hypothetical ... 28 9.6
>AF047655-7|AAC04404.1| 561|Caenorhabditis elegans Hypothetical
protein C17B7.10 protein.
Length = 561
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Frame = -2
Query: 786 WGAGARSAMLLVETPRE-----AAVPPCAAPLDL 700
W AGA SA+ LV +E AA P C APLDL
Sbjct: 29 WEAGAISAIFLVVDHQEPESHRAAYPWCFAPLDL 62
>AF036699-1|AAB88362.1| 331|Caenorhabditis elegans Hypothetical
protein F58F6.6 protein.
Length = 331
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -2
Query: 345 NFIIVVLYRYVF*MNLLTKR*FTITIIYSLYSK--SFASDIDFVIGTSLLDTHFFTITSK 172
N +I V +VF + LT R F +IY S FA +++ + +S F + K
Sbjct: 120 NLVIAVQRAFVFFLRNLTDRFFESKVIYIWISSIYIFAFGVEYALMSSNCQYRFGELARK 179
Query: 171 ANLLQNTT 148
L+ TT
Sbjct: 180 YQLICETT 187
>AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical
protein Y51A2D.19c protein.
Length = 1131
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 414 F*KEYDIDFSDLVEGKEGRRTWCPLRDRMPICSDRHSVA 530
F K+++ F D+ G WCP R+ +RH A
Sbjct: 747 FSKDFEQQFQDMKYDSTGMFHWCPSRNLEDCVLERHQAA 785
>AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical
protein Y51A2D.19b protein.
Length = 1118
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 414 F*KEYDIDFSDLVEGKEGRRTWCPLRDRMPICSDRHSVA 530
F K+++ F D+ G WCP R+ +RH A
Sbjct: 734 FSKDFEQQFQDMKYDSTGMFHWCPSRNLEDCVLERHQAA 772
>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
protein Y51A2D.19a protein.
Length = 1140
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 414 F*KEYDIDFSDLVEGKEGRRTWCPLRDRMPICSDRHSVA 530
F K+++ F D+ G WCP R+ +RH A
Sbjct: 756 FSKDFEQQFQDMKYDSTGMFHWCPSRNLEDCVLERHQAA 794
>AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1c protein.
Length = 1131
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 414 F*KEYDIDFSDLVEGKEGRRTWCPLRDRMPICSDRHSVA 530
F K+++ F D+ G WCP R+ +RH A
Sbjct: 747 FSKDFEQQFQDMKYDSTGMFHWCPSRNLEDCVLERHQAA 785
>AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1b protein.
Length = 1118
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 414 F*KEYDIDFSDLVEGKEGRRTWCPLRDRMPICSDRHSVA 530
F K+++ F D+ G WCP R+ +RH A
Sbjct: 734 FSKDFEQQFQDMKYDSTGMFHWCPSRNLEDCVLERHQAA 772
>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1a protein.
Length = 1140
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 414 F*KEYDIDFSDLVEGKEGRRTWCPLRDRMPICSDRHSVA 530
F K+++ F D+ G WCP R+ +RH A
Sbjct: 756 FSKDFEQQFQDMKYDSTGMFHWCPSRNLEDCVLERHQAA 794
>U41274-2|AAD50512.1| 347|Caenorhabditis elegans Intracellular
lectin protein 2 protein.
Length = 347
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 595 LVIQSVVPLVRGLGVGFIHF 654
LVI V+ LV GLG GF++F
Sbjct: 316 LVIVGVIVLVGGLGFGFVYF 335
>AF101305-7|AAF98591.1| 279|Caenorhabditis elegans Hypothetical
protein C04F5.8 protein.
Length = 279
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +3
Query: 429 DIDFSDLVEGKEGRRTWCPL---RDRMPICSDRHSVA 530
D D +LVE E RT+CP+ RD +P+ HS++
Sbjct: 57 DDDVEELVERDELSRTYCPVCSSRDTVPLNFISHSLS 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,256,145
Number of Sequences: 27780
Number of extensions: 303655
Number of successful extensions: 680
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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