Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h17
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   2.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   2.0  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   8.2  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = -2

Query: 615 DNRLNYEQALASVARLNYELEQSVTGSGKLHYADQNRLAYDPAVDTMCADPPYLLQ 448
           D+ + Y    A+V RLN    + +   G++ +       YD  +  + A P   LQ
Sbjct: 44  DDEITYNIISAAVNRLNIPANEILELFGRMFFEFCQDSGYDKILQVLGATPRDFLQ 99


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = -2

Query: 615 DNRLNYEQALASVARLNYELEQSVTGSGKLHYADQNRLAYDPAVDTMCADPPYLLQ 448
           D+ + Y    A+V RLN    + +   G++ +       YD  +  + A P   LQ
Sbjct: 44  DDEITYNIISAAVNRLNIPANEILELFGRMFFEFCQDSGYDKILQVLGATPRDFLQ 99


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 830 YKWISDEVLKIIVVRGGPVLG 768
           YKWIS    K++V  G  V+G
Sbjct: 79  YKWISPGDTKVMVEHGELVMG 99


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 766 GPSTGPPRTTIIFSTSSLIHLY 831
           GP+ GPP       T SL HL+
Sbjct: 344 GPTMGPPHHHHHHQTQSLQHLH 365


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 199 YTFFYDNFQGKLITKHYLTDL 137
           Y + Y+N+  KL  K+Y+ ++
Sbjct: 329 YKYNYNNYNKKLYYKNYIINI 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,233
Number of Sequences: 438
Number of extensions: 4319
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)