Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10h16
(742 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 38 0.002
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 35 0.011
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 31 0.23
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 31 0.23
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.30
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.30
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr... 29 0.92
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom... 29 0.92
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 0.92
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 29 0.92
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 1.2
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 28 1.2
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 1.6
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 28 1.6
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 27 2.1
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 27 2.1
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 27 2.8
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 27 2.8
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 27 2.8
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy... 26 4.9
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 6.5
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 6.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.5
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 26 6.5
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 26 6.5
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 37.9 bits (84), Expect = 0.002
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 2/129 (1%)
Frame = -1
Query: 661 EEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCLTNESQRDVRW 482
+ +D+ + + SG ++++SN++L N N V L + S N EVK E + D
Sbjct: 184 KSVDIDDMDTSGFAAIESNKALSNISFN-YVYYTLENDSENINEVK----KFEDEED--- 235
Query: 481 NEIPSCSTDFNDSNVLE-NENEKTLSNVSDGADSENNLPEFIVIDLKCDVNDNKLS-DDD 308
P+ S+ N+S+ L+ ++N L +G S+ N + V L DV NK +D
Sbjct: 236 TSTPNTSSFQNNSSSLDLSDNLSYLLQYLEGNRSKINATDADVKQLLSDVKKNKSKWAND 295
Query: 307 SNVGNNESY 281
+G E Y
Sbjct: 296 QRIGQEELY 304
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 35.1 bits (77), Expect = 0.011
Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 7/171 (4%)
Frame = -1
Query: 682 NNNECLPEEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCLTNE 503
NN C P D+ ++ S ++S L + + ++++ L ++D E
Sbjct: 3889 NNGFCSP---DLPQEGKSNSGELESGTGLGSGVGAEDITNTL--NEDDDLEELANEEDTA 3943
Query: 502 SQRDVRWNEIPSCSTDFN----DSNVLENENEKTLSNVSDGADSENNLPEFIVIDLKCDV 335
+Q D+ +E +D N DS V ENEN + D + N++PE + L +
Sbjct: 3944 NQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKL 4003
Query: 334 NDNKLSDD---DSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTENE 191
D +D N +S + + + D N++L + + E E
Sbjct: 4004 WDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEE 4054
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 30.7 bits (66), Expect = 0.23
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -1
Query: 685 TNNNECLPEEIDVVEDNDSGMSS-VDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCLT 509
T+ ++ LP I + SG S+ + + S K L++ + SEN +SN +
Sbjct: 221 TSPDKILPTRIKSKDTVSSGDSTPLSGSSSSKGMLMSMSTSENHSLSSNPELSNSNLLAK 280
Query: 508 NESQRDVRWNE 476
NES DV NE
Sbjct: 281 NESPADVSNNE 291
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 30.7 bits (66), Expect = 0.23
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = -1
Query: 481 NEIPSCSTDFNDSNVLENE--NEKTL-SNVSDGADSENNLPEFIVIDLKCDVNDNKLSDD 311
+ + S + S+V+E E +E T+ S VSD D +++PE + ++ND L +
Sbjct: 10 SRVSSNPDEVKGSSVVEEEPDSESTIKSRVSDEIDEHDSIPEQSNTEKSIEINDKNL-EA 68
Query: 310 DSNVGNNESYTDPD 269
+ ++ +N S P+
Sbjct: 69 EKDIESNLSLRPPE 82
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 415 TLSNVSDGADSENNLPEFIVIDLKCDVNDNKLSDD-DSNVGNNESYTDPD 269
T+ G++S +N+ D D NDN +D DSN NN + T+ D
Sbjct: 502 TVERKEGGSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTD 551
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 415 TLSNVSDGADSENNLPEFIVIDLKCDVNDNKLSDD-DSNVGNNESYTDPD 269
T+ G++S +N+ D D NDN +D DSN NN + T+ D
Sbjct: 502 TVERKEGGSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTD 551
>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 28.7 bits (61), Expect = 0.92
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = -1
Query: 700 VIENKTNNNECLPEEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKT 521
++ N + E E D V DNDS S+V+S+ + N + NV N +T N + +K
Sbjct: 195 LLPNNSKGVEKSEENEDGVTDNDS--SNVNSSTNESPNPTDINVCSNDDATDNTENNLKK 252
Query: 520 K 518
K
Sbjct: 253 K 253
>SPBC19C2.02 |pmt1||DNA methyltransferase
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 330
Score = 28.7 bits (61), Expect = 0.92
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -1
Query: 484 WNEIPSCS--TDFNDSNVLENENEKTLSNVSDGADSENNLPEFIVIDLKCDVNDNKLSDD 311
W PSC T + + + + N+ + NNLPE+I+I+ ++K +++
Sbjct: 75 WTMSPSCQPFTRIGNRKDILDPRSQAFLNILNVLPHVNNLPEYILIENVQGFEESKAAEE 134
Query: 310 DSNVGNNESY 281
V N Y
Sbjct: 135 CRKVLRNCGY 144
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.7 bits (61), Expect = 0.92
Identities = 24/111 (21%), Positives = 44/111 (39%)
Frame = -1
Query: 544 NNDCEVKTKCLTNESQRDVRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSENNLPE 365
NN T T+E D+ NEIP+ + + E EN K S + + S + L
Sbjct: 396 NNSAVQPTTQKTSEDSTDLHTNEIPNVA---QPPSSFEKENNKDTSKLENPDISSSPLSP 452
Query: 364 FIVIDLKCDVNDNKLSDDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNE 212
+ D + L + +N + P++D ++S+ +N+
Sbjct: 453 TEDL-FPNDPEEENLFSAALGLNSNTGSQPSETQSKPSIDPSESITVTDNQ 502
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 28.7 bits (61), Expect = 0.92
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -1
Query: 694 ENKTNNNECLPEEIDVVEDND--SGMSSVDSNESLKNNL 584
++K NN +P+E+D+VE+ D + S+D N ++ +L
Sbjct: 305 KDKFKNNPTIPQELDLVEEEDQITHYISLDDNLDVQESL 343
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 28.3 bits (60), Expect = 1.2
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Frame = -1
Query: 496 RDVRWNEIPSCSTDFNDSNVLE-----NENEKTLSNVSDGADSENNLPEFIVIDLKCDVN 332
+++ +N+ S T F +SN E + N T ++ S D ++++ + D+N
Sbjct: 170 KNITFND-KSGLTKFGNSNSYETTYSDSSNYHTSTDSSQYNDQDDHVYDDTNDGTDDDIN 228
Query: 331 DNKLSDDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTENE 191
+N+ DD+S+ G+ D D D +++ ++E N +E
Sbjct: 229 NNEYKDDESSSGSESYERDEDVDEEEEEDDDENNDEGDDEDENENDE 275
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 28.3 bits (60), Expect = 1.2
Identities = 22/106 (20%), Positives = 48/106 (45%)
Frame = -1
Query: 691 NKTNNNECLPEEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCL 512
+ T+NNE + ++ + S N + NN + N + N ++ NN+ + +
Sbjct: 534 SNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNSNSGNYNNN--NSGNNNQQHQQ--- 588
Query: 511 TNESQRDVRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSENN 374
++ S + + + + S S + N N N N+ +N + ++ NN
Sbjct: 589 SSSSLQGLASSFLNSSSGNSNKQNYNNNNNQNYGNNNNQNYNNNNN 634
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/106 (18%), Positives = 44/106 (41%)
Frame = -1
Query: 691 NKTNNNECLPEEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCL 512
N +NNN +N+S +S + S + ++ + + + N + SN+
Sbjct: 521 NSSNNNSNTSNNNSNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNSNSGNYNNNNSG 580
Query: 511 TNESQRDVRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSENN 374
N Q + + ++ F +S+ N N++ +N ++ NN
Sbjct: 581 NNNQQHQQSSSSLQGLASSFLNSS-SGNSNKQNYNNNNNQNYGNNN 625
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/54 (22%), Positives = 34/54 (62%)
Frame = -1
Query: 607 NESLKNNLINKNVSENLCSTSNNDCEVKTKCLTNESQRDVRWNEIPSCSTDFND 446
+E ++NN+ +SE+L +++NN +V+ + L+ + +++ + ++ + T +D
Sbjct: 433 SEIVRNNIYMNFLSESLETSNNNLTKVQAELLSTKMRQEACYLQLTASRTQCSD 486
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -1
Query: 430 NENEKTLSNVSDGADSENNLPEFIVIDLKCDVNDNKLSDDDSNV 299
N NEK + ++ +S + LPE + + L D+ND+ S + +N+
Sbjct: 116 NSNEKAQNKIATNKESTDILPEEVQLVLN-DLNDDVKSANSANL 158
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 27.5 bits (58), Expect = 2.1
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = -1
Query: 667 LPEEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCLTNESQRD- 491
+P +D V D D V++ +N V ++L +T ++ T ++Q D
Sbjct: 387 VPRTLDEVYDIDRDTEIVNAGG------VNSLVYKHLLNTDFQKLDLND---TTKNQNDQ 437
Query: 490 VRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSENN 374
+ NE D N + +ENE E+T + S + N
Sbjct: 438 ILPNETSESDDDANSISSMENEEERTSDSKSSAKQGKGN 476
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -1
Query: 631 SGMSSVDSNESLKNNLINK--NVSENLCSTSNNDCEVKTKCLTNESQRDVRWNEIPSCST 458
+G SV N K ++K NVS+ TS CE + ++++V +PS
Sbjct: 822 NGTRSVSKNTPEKETKVDKIDNVSKKDVETSPGSCETSSAFAKTYAEKEVTSINLPSVRK 881
Query: 457 DFNDS 443
++S
Sbjct: 882 PLDES 886
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +1
Query: 37 YLINTAPKMTNKEHNNLF 90
Y++N+ K+TN+E NN+F
Sbjct: 802 YVVNSTSKLTNEEINNVF 819
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 119 ELCETSHRLQQRGKQYRQRQTEQLFVLSVSDFVVYRN 229
E C+ +Q+ +YR+++T++ LS SD + +N
Sbjct: 160 EACDDLESARQKNDKYREQKTQRNLKLSESDMLDKKN 196
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 27.1 bits (57), Expect = 2.8
Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 16/192 (8%)
Frame = -1
Query: 721 FGKTKVIVIENKTNNNECLPEEIDVVEDNDSGMSS-VDSNESLKNNLINKNVSENLCSTS 545
+ + K ++ + N CLP+E D+ D+ + +S+ D N S +++ S T+
Sbjct: 510 YTRKKQLLEQQGKGNVACLPKESDLSMDSITEVSAQADENSS---QILSSKTSNAPNGTT 566
Query: 544 NNDCEVKTKCLTNESQ----RDVRWNE-----IPSCSTDFNDSNVLENENEKTLSNVSDG 392
D E K + S + R+N+ +P SN +E + G
Sbjct: 567 ETDFEDKVPLVDYISPFYRFKSYRFNQQFVERVPLKYRSLTYSNKIEPMKVFCKYETTGG 626
Query: 391 ADSENNLPEFIVIDLKCDVNDNKLSDDDSNV--GNNESYTDPDCSGI----PNVDTNQSL 230
++++ D+K D+++ D S GN+E + SG+ N D N
Sbjct: 627 VCNDDHCEASHFRDIKMTGYDDEIIQDLSRYIEGNDEIEKESYKSGLDIVMKNTDENTDF 686
Query: 229 VPINNEIANTEN 194
V + I N
Sbjct: 687 VDVATRIVEYHN 698
>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 501 DSLVRHLVLTSQSLLLVEHKFSLTFLLIKLFLRDS 605
++++ ++ ++ L E+KFSL LL ++F R S
Sbjct: 91 EAILNRALIIAEQHNLTEYKFSLQLLLSRVFCRTS 125
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.8 bits (54), Expect = 6.5
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 667 LPEEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCLTNE 503
L E+I +ED SV S+ +L + L + V+EN+ S + E+K L E
Sbjct: 277 LKEKIKKIEDERMRQMSVSSDRTLDSQL--QTVNENITRISTS-IELKNTALEEE 328
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 640 DNDSGMSSVDSNESLKNNL 584
D+DSG SS SNE +++N+
Sbjct: 46 DDDSGGSSESSNEDMRDNI 64
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 6.5
Identities = 20/83 (24%), Positives = 33/83 (39%)
Frame = -1
Query: 469 SCSTDFNDSNVLENENEKTLSNVSDGADSENNLPEFIVIDLKCDVNDNKLSDDDSNVGNN 290
SC+TD + S + E+ + S+ S S + LP C S G +
Sbjct: 76 SCTTDTSASTPIITESTSSTSSASTTGSSSSPLPS---TSTSCTT-----STSIPPTGGS 127
Query: 289 ESYTDPDCSGIPNVDTNQSLVPI 221
S + P +P T+ + +PI
Sbjct: 128 SSLSTPITPTVPPTSTSSTSIPI 150
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.8 bits (54), Expect = 6.5
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = -1
Query: 664 PEEIDV-VEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCLTNESQ--R 494
P E D E SG+SS S ESL ++ ++ + N + S++ K T+ Q +
Sbjct: 420 PAEKDAKAERKKSGLSSSTSEESLNRHISKRSSNSNDTAPSSHIIADKNLEPTSNIQLKK 479
Query: 493 DVRWNEIPSCSTDFNDSNVLENENEKTLS 407
+ N + + +D N + + TLS
Sbjct: 480 NPDGNLVETSELSDSDENSVLSNKSSTLS 508
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 350 IYHNKFRKIVFTVRTVRDVRERLFVLVF 433
++ + R + F+ +TVRD ++RLF L F
Sbjct: 469 VFASSERDVSFSPKTVRDDQKRLFELPF 496
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,022
Number of Sequences: 5004
Number of extensions: 41839
Number of successful extensions: 253
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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