Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10h16
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1047 + 25666113-25666442,25666606-25666651,25667042-256671... 34 0.10
05_01_0146 - 953957-956278,956468-956786,957185-957213 31 0.73
11_06_0021 + 19314211-19314311,19315202-19315307,19317135-193174... 31 0.96
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 31 0.96
01_06_1676 - 39084928-39085016,39085462-39085555,39085664-390857... 31 1.3
03_05_1094 - 30348366-30348467,30348571-30348753,30348833-303489... 30 2.2
08_01_0168 - 1385439-1385979,1386081-1387438 29 2.9
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12... 29 3.9
11_01_0017 - 129261-129335,129352-129426,129565-129645,129929-13... 29 3.9
04_01_0021 + 311914-312399,314218-314310,314391-314672,314754-31... 29 3.9
02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522 29 3.9
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 29 3.9
03_06_0195 + 32256771-32258792 29 5.1
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402... 29 5.1
11_01_0593 - 4705565-4705822,4705916-4706065,4706160-4706307,470... 28 6.8
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 28 6.8
01_06_1071 - 34289609-34292941 28 6.8
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687... 28 9.0
03_01_0493 - 3731492-3731512,3731755-3732057,3732179-3732196 28 9.0
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 28 9.0
>12_02_1047 +
25666113-25666442,25666606-25666651,25667042-25667130,
25667291-25667493,25667807-25667949,25668286-25668332,
25668794-25668870,25668952-25668981,25669068-25669163,
25669489-25669591,25669959-25670041,25670204-25670326,
25670465-25670576,25670791-25670898,25671006-25671593
Length = 725
Score = 34.3 bits (75), Expect = 0.10
Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Frame = -1
Query: 649 VVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCLTNESQRDVRWNEIP 470
+VE D+G+S NE +K +K S ++C +++N C+ E + +
Sbjct: 603 IVEGGDTGIS----NEDIKGVAASKEASSSICRSADN----LAGCVLLEEA--TLSDSVM 652
Query: 469 SCSTDFNDSNVLENENEKTLSNVSDGA--DSENNLPEFIVIDLKCDVNDNKLSD 314
D ++ + +++E+ ++ +S GA +SE N + D+ CD +D+++ D
Sbjct: 653 KDEEDTTKADPVSSQDEQEVAVLSPGAWKNSEENTHKQPQPDICCDSSDSEMDD 706
>05_01_0146 - 953957-956278,956468-956786,957185-957213
Length = 889
Score = 31.5 bits (68), Expect = 0.73
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Frame = -1
Query: 709 KVIVIENKTNNNECLPEEI-DVVEDNDSGMSSVDSNESLKNNLINK------NVSENLCS 551
K++V++ ++ + EE+ D V +N S D N L+ +++N+ N E
Sbjct: 740 KLVVVDEAYSS---VHEEVTDSVVENGDAESENDKNPKLELDVLNRSSNGDMNHEEEKGE 796
Query: 550 TSNNDCEVKTKCLTNESQRDVRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSEN 377
T EVKT+C T ES + + P + S E T + +G SE+
Sbjct: 797 TKVEQEEVKTECTTQESNKIIEKQPHPDRKQETVSSKDELEPKEDTNTEHPNGTVSED 854
>11_06_0021 +
19314211-19314311,19315202-19315307,19317135-19317412,
19318587-19318692,19318812-19319159,19319237-19319313,
19319392-19319516,19319884-19320135,19320314-19320336
Length = 471
Score = 31.1 bits (67), Expect = 0.96
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -1
Query: 694 ENKTNNNECLPEEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNND 536
++ TNNN PE+ + +D S S D+ + +N I+ N E + +S D
Sbjct: 76 DDNTNNNA--PEKDEAKDDRSSKEESEDAQPTSDSNKISSNADEPVAKSSETD 126
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 31.1 bits (67), Expect = 0.96
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 4/144 (2%)
Frame = -1
Query: 709 KVIVIENKTNNNECLPEEIDVVEDNDSGMS-SVDSNESLKNNLINKNVSENLCSTSNNDC 533
K + E K N+ L EE ++E + +D + K L+N E + +
Sbjct: 371 KATIAETKAENST-LTEEKHLLESKLKLLGVEIDDLIAEKEELMNSMNIERGAAAEEKEM 429
Query: 532 EVK--TKCLTNESQRDVRWNEIPSCSTDFNDS-NVLENENEKTLSNVSDGADSENNLPEF 362
V +KCLT + E+ S + D ND VL+NE S + S NL
Sbjct: 430 LVSKHSKCLTELEKAQSSVKELESTNGDLNDKIAVLQNEKNSLSSELQQLEASFENLGND 489
Query: 361 IVIDLKCDVNDNKLSDDDSNVGNN 290
+ +L+ +K ++D V +N
Sbjct: 490 LEQELERISIMHKNNEDLELVNSN 513
>01_06_1676 -
39084928-39085016,39085462-39085555,39085664-39085750,
39085941-39086073,39086451-39086724,39086863-39086989,
39087095-39087345,39087476-39087575
Length = 384
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 490 VRWNEIPSCSTDFNDSNVLENENEKTLSNVSDG 392
VRW C+ N+S+ LEN + K L++ +DG
Sbjct: 2 VRWRRWICCNCQVNESDQLENGHAKVLTSNADG 34
>03_05_1094 -
30348366-30348467,30348571-30348753,30348833-30348934,
30349617-30349967,30350049-30350276,30350353-30350509,
30351189-30351370,30351443-30351866,30351949-30352892,
30353509-30353773,30354558-30355120
Length = 1166
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/91 (27%), Positives = 37/91 (40%)
Frame = -1
Query: 670 CLPEEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCLTNESQRD 491
C+ ++ DSGM D NE K L K+ C + N D L+ R
Sbjct: 429 CIVDDDSYGHIKDSGMMLQDHNEEEKPGLSMKSHGNCSCISGNTD------ILSRRRIRS 482
Query: 490 VRWNEIPSCSTDFNDSNVLENENEKTLSNVS 398
V NE+ ++ +D+ V+ EN S S
Sbjct: 483 VE-NELEDSASSVHDAAVVVEENPSETSKHS 512
>08_01_0168 - 1385439-1385979,1386081-1387438
Length = 632
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = -1
Query: 514 LTNESQRDVRWNEIPSCSTDFN-DSNVLE-----NENEKTLSNVSDGADSENNLPEFIVI 353
+TNES D N + + D+N S++L N+ K N+SD D ++ LPE + I
Sbjct: 184 VTNESLPDFSLNGSMTATVDYNSSSSILSVKLWINDTTKPPYNLSDKVDLKSALPEKVTI 243
>12_01_0017 -
127617-127775,127920-128000,128284-128395,128486-129538,
129617-129705,130136-130309,130566-130687,130790-130924,
131132-131494,131561-131728,131850-131889
Length = 831
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -1
Query: 670 CLPEEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCL 512
C P +++ +D+G ++VD SL S +CS+ N+C T L
Sbjct: 501 CTPNDLNSQSKSDNGETAVDIENSLSG-----ETSGTVCSSEGNNCTSATDSL 548
>11_01_0017 -
129261-129335,129352-129426,129565-129645,129929-130040,
130131-131177,131256-131347,131773-131943,132150-132253,
132367-132501,132583-132724,132803-133059,133126-133337,
133417-133454
Length = 846
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -1
Query: 670 CLPEEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCL 512
C P +++ +D+G ++VD SL S +CS+ N+C T L
Sbjct: 519 CTPNDLNSQSKSDNGETAVDIENSLSG-----ETSGTVCSSEGNNCTSATDSL 566
>04_01_0021 +
311914-312399,314218-314310,314391-314672,314754-314826,
315273-315405,315476-315629,315763-315843,316174-316296,
316629-316787,316862-316996,317159-317254,317416-317910,
318651-318722,319496-319537
Length = 807
Score = 29.1 bits (62), Expect = 3.9
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = -1
Query: 580 NKNVSENLCSTSNNDCEVKTKCLTNESQRDVRWNEIPSCSTDFND--SNVLENENEKTLS 407
+KN ENL S+ + +++ L ++ D + I + ND N LE +++
Sbjct: 645 SKNSGENLDSSMQKNDNGESQQL-GDAPADSSSSAIDEIKGNSNDRVGNGLEGSHDEYNE 703
Query: 406 NVSDGADSENNLPEFIVIDLKCD--VNDNKLSDDDSNVGNNE 287
+ E +L V DLK + D K SDD S++ NN+
Sbjct: 704 VAGEDIHGEASLINESV-DLKVSDCLEDRKTSDDGSSISNND 744
>02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522
Length = 766
Score = 29.1 bits (62), Expect = 3.9
Identities = 42/164 (25%), Positives = 62/164 (37%), Gaps = 9/164 (5%)
Frame = -1
Query: 661 EEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCLTNESQRDVRW 482
EE+ +V+D + +D + NN+I S L + +C T D
Sbjct: 611 EELHMVDDATMTLEPMDEENNDFNNVICPCPSLELEEHCHLATPAIDECNTATPAPD--- 667
Query: 481 NEIPSCSTDFNDSNVLENENEKTLSNVS------DGADSENNL---PEFIVIDLKCDVND 329
+ IP +TDF+ LEN NE + D DS+N L P ++ C+V
Sbjct: 668 SVIPQQNTDFDQDGHLENPNEMDQIELMVEPICVDHNDSDNVLSSSPSAQALEENCEV-- 725
Query: 328 NKLSDDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTE 197
+ GN + T S P DT+ LV TE
Sbjct: 726 -----AKAVNGNVDPTTQVTGSSTPQQDTDVKLVAEQENPGTTE 764
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 29.1 bits (62), Expect = 3.9
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 8/150 (5%)
Frame = -1
Query: 673 ECLPEEIDVVEDNDSGMSSVDSNESLKN---NLINKNVSENLCSTSNNDCEVKTKCLTNE 503
+ LP+++D++E SG E N +K ENL N ++ + L
Sbjct: 581 DMLPQDVDLIEL--SGQRKSVGGELFSNVGAEAASKMEDENL--EQPNPFKICDQNLIGS 636
Query: 502 SQRDVRWNE--IPSCSTDFNDSNVLENENEKTLSNVSDGADSENNLPEFIVIDLKCDVND 329
S+ V N + CST+ + + +N+++ ++ D A S NN+ + + + V D
Sbjct: 637 SEVSVIHNNPGLAQCSTEGSCTESQKNQHQDFVTTSGDIAGSTNNMCQLPLDNKGVQVID 696
Query: 328 NKLSDDDSNVG---NNESYTDPDCSGIPNV 248
+ D VG ++++ +D CS + N+
Sbjct: 697 IE-DDTPIEVGGFDSSKAKSDMICSNMDNM 725
>03_06_0195 + 32256771-32258792
Length = 673
Score = 28.7 bits (61), Expect = 5.1
Identities = 27/153 (17%), Positives = 65/153 (42%), Gaps = 3/153 (1%)
Frame = -1
Query: 682 NNNECLPEEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEV--KTKCLT 509
+NN+ + ID + + D ++ ++ + + +C N D E+ + +
Sbjct: 121 SNNDHVDSNIDAATEVTTFSGEEDLDDETDGDIECFDEEDGICE-ENPDDEIFDDEEEES 179
Query: 508 NESQRDVRWNEIPSCSTDFNDSNVLENE-NEKTLSNVSDGADSENNLPEFIVIDLKCDVN 332
+ + D+ +++ + S ++ +S E++ E+ +++ +D + E + D +
Sbjct: 180 DPEEEDIGSSDLETDSDEYIESTDEESDYEEEDTTDLESDSDEDTESTESSHDEDDLDDD 239
Query: 331 DNKLSDDDSNVGNNESYTDPDCSGIPNVDTNQS 233
D L DD S + E + +VDT S
Sbjct: 240 DESLDDDGSECFDEEDKIGTENPDDESVDTGSS 272
>01_07_0306 +
42638683-42638990,42639074-42639314,42639935-42640236,
42640431-42640607,42640853-42641617,42641697-42641791,
42641889-42641951,42642047-42642135,42642229-42642324,
42642457-42643104,42643596-42643628,42643838-42643912,
42644442-42644603,42644604-42644674,42644758-42644815,
42645196-42645394,42645487-42645552,42645699-42646183
Length = 1310
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = -1
Query: 511 TNESQRDVRWNEI--PSCSTDFNDSNVLENENEKTLSNVSD----GADSENNLPEFIVID 350
+N SQ R + I P+ ++ DS EN+N+ +SN D GA+S +N + I+
Sbjct: 478 SNNSQVTPRMDNISSPAGLSESEDSAATENKNKDKISNSGDFENEGANSAHNSADLIISS 537
Query: 349 LK 344
K
Sbjct: 538 KK 539
>11_01_0593 -
4705565-4705822,4705916-4706065,4706160-4706307,
4706400-4706479,4706573-4706739,4706830-4707078,
4707161-4707733,4707833-4707972,4708064-4708185,
4708622-4708743,4708877-4709105
Length = 745
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/84 (22%), Positives = 37/84 (44%)
Frame = -1
Query: 736 PSYGSFGKTKVIVIENKTNNNECLPEEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENL 557
PS + GK+ V++ E ++++ +PEE+ + + + S S+ L I + S
Sbjct: 340 PSRSNSGKSSVVIEELDNSSDKEIPEELIALREKFPSVYSTFSHSELAK--ITSDFSPEC 397
Query: 556 CSTSNNDCEVKTKCLTNESQRDVR 485
+V CL N + V+
Sbjct: 398 IVGQGGTSQVYKGCLENGKELAVK 421
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = -1
Query: 742 NSPSYGSFGKTKVIVIENKTNNNECLPEEIDVVEDNDSGMSSVDSNESLKNNLINKNVSE 563
NSPS SF K + +E NN+ + + D +ED ++ S+ D +S + + V E
Sbjct: 472 NSPSTRSFRKKGTLQME---NNSSFVDAQSDSMEDTNNEHSATDGCDSSRK---EECVDE 525
Query: 562 NLC 554
++C
Sbjct: 526 SIC 528
>01_06_1071 - 34289609-34292941
Length = 1110
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 325 KLSDDDS-NVGNNESYTDPDCSGIPNVD 245
KLSDDDS +V + ++ D DCS P ++
Sbjct: 329 KLSDDDSWSVFKSHAFRDGDCSAHPELE 356
>06_03_1496 -
30567968-30568210,30568345-30568513,30568635-30568736,
30569087-30571855,30572402-30572430,30572546-30572659,
30572735-30572846,30574730-30574845,30574928-30575068,
30575121-30575243,30575346-30575478,30575842-30575972,
30576065-30576300,30577073-30577376
Length = 1573
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 742 NSPSYGSFGKTKVIVIENKTNNNECLPEEIDVVEDND 632
+ PS+G T+ ++E K N P I ED D
Sbjct: 97 DDPSHGFLLGTRQTILETKNGGNTWFPRSIPSAEDED 133
>03_01_0493 - 3731492-3731512,3731755-3732057,3732179-3732196
Length = 113
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 493 DVRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSE 380
D++ +P S DF+ + +N+K LS S G D +
Sbjct: 29 DMKNGALPDYSMDFSKIREMRKQNKKELSRTSLGGDDD 66
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/68 (25%), Positives = 35/68 (51%)
Frame = -1
Query: 691 NKTNNNECLPEEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCL 512
N N++ + E++ N S + S+++ E++ + N+ + +LC +S ND K
Sbjct: 1003 NTEKNDKMVVGEVETPMKNVS-LESLETTENITSEDENEIKAGHLCESSENDIRFPEKED 1061
Query: 511 TNESQRDV 488
TN+ +V
Sbjct: 1062 TNKIDLEV 1069
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,602,777
Number of Sequences: 37544
Number of extensions: 225478
Number of successful extensions: 905
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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