Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10h16
(742 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23517-8|AAM98041.1| 605|Caenorhabditis elegans A kinase anchor... 38 0.010
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor... 38 0.010
U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor... 38 0.010
AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anch... 38 0.010
Z98866-14|CAB11553.1| 524|Caenorhabditis elegans Hypothetical p... 34 0.092
U80454-4|AAB37876.3| 896|Caenorhabditis elegans Prion-like-(q/n... 34 0.12
Z19152-11|CAA79540.2| 1003|Caenorhabditis elegans Hypothetical p... 33 0.21
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 33 0.28
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 31 0.65
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 31 0.65
AF016428-5|ABR92601.1| 152|Caenorhabditis elegans Hypothetical ... 31 0.65
AF016428-4|ABR92600.1| 504|Caenorhabditis elegans Hypothetical ... 31 0.65
Z68222-9|CAE46689.1| 631|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z68222-8|CAC70146.2| 613|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z68217-11|CAE46673.1| 631|Caenorhabditis elegans Hypothetical p... 31 1.1
Z68217-10|CAC70099.2| 613|Caenorhabditis elegans Hypothetical p... 31 1.1
Z68217-4|CAA92467.2| 499|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear recep... 31 1.1
U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein. 30 1.5
AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain fa... 30 1.5
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 29 3.5
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF078157-11|AAG24070.1| 401|Caenorhabditis elegans Hypothetical... 29 4.6
Z81497-7|CAB04083.3| 652|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z75955-17|CAB00127.3| 652|Caenorhabditis elegans Hypothetical p... 28 6.0
Z72502-1|CAA96585.2| 430|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z66524-7|CAA91419.2| 626|Caenorhabditis elegans Hypothetical pr... 28 6.0
U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical pr... 28 6.0
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 28 6.0
U41554-1|AAA83296.2| 556|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical pr... 28 8.0
U55364-5|AAQ23124.1| 368|Caenorhabditis elegans Prion-like-(q/n... 28 8.0
U55364-4|AAA97972.1| 382|Caenorhabditis elegans Prion-like-(q/n... 28 8.0
U21317-2|AAA62531.3| 729|Caenorhabditis elegans Hypothetical pr... 28 8.0
AF022970-1|AAB69895.1| 142|Caenorhabditis elegans Hypothetical ... 28 8.0
>U23517-8|AAM98041.1| 605|Caenorhabditis elegans A kinase anchor
protein protein1, isoform c protein.
Length = 605
Score = 37.5 bits (83), Expect = 0.010
Identities = 35/161 (21%), Positives = 72/161 (44%), Gaps = 5/161 (3%)
Frame = -1
Query: 661 EEIDV-VEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKT---KCLTNESQR 494
E+IDV +N + +S + ++N + V EN+ +D ++ NE
Sbjct: 338 EKIDVEFIENSEAIVQNESEDVPESNSTSGTVLENIEDHLESDVVIENGSESSFVNEKMN 397
Query: 493 DVRWNEIPSCSTDFNDSNV-LENENEKTLSNVSDGADSENNLPEFIVIDLKCDVNDNKLS 317
+ + + + +DS + LE E+++TLS + + + N EF + + ++ S
Sbjct: 398 EASTAHLVAEQSVVDDSEIHLETEDQETLSPETADSSTNKNSDEF-----PDEGSQSEAS 452
Query: 316 DDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTEN 194
++ V N + + +C+ + V+ N N+ NTEN
Sbjct: 453 VNNEEVLENVEHVEDECTVVDAVNENTDSSIEENDEENTEN 493
>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
protein protein1, isoform b protein.
Length = 1284
Score = 37.5 bits (83), Expect = 0.010
Identities = 35/161 (21%), Positives = 72/161 (44%), Gaps = 5/161 (3%)
Frame = -1
Query: 661 EEIDV-VEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKT---KCLTNESQR 494
E+IDV +N + +S + ++N + V EN+ +D ++ NE
Sbjct: 338 EKIDVEFIENSEAIVQNESEDVPESNSTSGTVLENIEDHLESDVVIENGSESSFVNEKMN 397
Query: 493 DVRWNEIPSCSTDFNDSNV-LENENEKTLSNVSDGADSENNLPEFIVIDLKCDVNDNKLS 317
+ + + + +DS + LE E+++TLS + + + N EF + + ++ S
Sbjct: 398 EASTAHLVAEQSVVDDSEIHLETEDQETLSPETADSSTNKNSDEF-----PDEGSQSEAS 452
Query: 316 DDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTEN 194
++ V N + + +C+ + V+ N N+ NTEN
Sbjct: 453 VNNEEVLENVEHVEDECTVVDAVNENTDSSIEENDEENTEN 493
>U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor
protein protein1, isoform a protein.
Length = 1280
Score = 37.5 bits (83), Expect = 0.010
Identities = 35/161 (21%), Positives = 72/161 (44%), Gaps = 5/161 (3%)
Frame = -1
Query: 661 EEIDV-VEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKT---KCLTNESQR 494
E+IDV +N + +S + ++N + V EN+ +D ++ NE
Sbjct: 338 EKIDVEFIENSEAIVQNESEDVPESNSTSGTVLENIEDHLESDVVIENGSESSFVNEKMN 397
Query: 493 DVRWNEIPSCSTDFNDSNV-LENENEKTLSNVSDGADSENNLPEFIVIDLKCDVNDNKLS 317
+ + + + +DS + LE E+++TLS + + + N EF + + ++ S
Sbjct: 398 EASTAHLVAEQSVVDDSEIHLETEDQETLSPETADSSTNKNSDEF-----PDEGSQSEAS 452
Query: 316 DDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTEN 194
++ V N + + +C+ + V+ N N+ NTEN
Sbjct: 453 VNNEEVLENVEHVEDECTVVDAVNENTDSSIEENDEENTEN 493
>AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anchor
protein protein.
Length = 1280
Score = 37.5 bits (83), Expect = 0.010
Identities = 35/161 (21%), Positives = 72/161 (44%), Gaps = 5/161 (3%)
Frame = -1
Query: 661 EEIDV-VEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKT---KCLTNESQR 494
E+IDV +N + +S + ++N + V EN+ +D ++ NE
Sbjct: 338 EKIDVEFIENSEAIVQNESEDVPESNSTSGTVLENIEDHLESDVVIENGSESSFVNEKMN 397
Query: 493 DVRWNEIPSCSTDFNDSNV-LENENEKTLSNVSDGADSENNLPEFIVIDLKCDVNDNKLS 317
+ + + + +DS + LE E+++TLS + + + N EF + + ++ S
Sbjct: 398 EASTAHLVAEQSVVDDSEIHLETEDQETLSPETADSSTNKNSDEF-----PDEGSQSEAS 452
Query: 316 DDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTEN 194
++ V N + + +C+ + V+ N N+ NTEN
Sbjct: 453 VNNEEVLENVEHVEDECTVVDAVNENTDSSIEENDEENTEN 493
>Z98866-14|CAB11553.1| 524|Caenorhabditis elegans Hypothetical
protein Y49E10.17 protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.092
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 3/152 (1%)
Frame = -1
Query: 655 IDVVEDNDSGMS-SVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCL--TNESQRDVR 485
+D V+DN + M S S E L++ +K S + TS + + +N S R
Sbjct: 54 LDAVQDNSTEMLYSRRSAEDLRSEQSSKTSSSTVSCTSLGSSNISSSSRQPSNGSFRS-S 112
Query: 484 WNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSENNLPEFIVIDLKCDVNDNKLSDDDS 305
+ S S+ SN + + T N S S + + +S S
Sbjct: 113 GSSNGSSSSSRRSSNGSSSSSGSTSDNSSSNISSSSRRSSNGSSRSSSSSSVGSMSSIAS 172
Query: 304 NVGNNESYTDPDCSGIPNVDTNQSLVPINNEI 209
NVG+ +S++D G N ++NQ LVP N EI
Sbjct: 173 NVGSIDSFSD----GSVNSNSNQQLVP-NPEI 199
>U80454-4|AAB37876.3| 896|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 66
protein.
Length = 896
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/88 (21%), Positives = 38/88 (43%)
Frame = -1
Query: 451 NDSNVLENENEKTLSNVSDGADSENNLPEFIVIDLKCDVNDNKLSDDDSNVGNNESYTDP 272
ND N +N K +N + + +N + +++ D ND+ + + + + DP
Sbjct: 686 NDPNAPNAQNSKDDANAQNAQNDQNAPNDANGQNVQIDRNDSNAQNGQNAPNDQNAQNDP 745
Query: 271 DCSGIPNVDTNQSLVPINNEIANTENEK 188
+ PNV +Q+ N N +N +
Sbjct: 746 NAQNAPNVQNSQNTRNAQNS-QNAQNAR 772
>Z19152-11|CAA79540.2| 1003|Caenorhabditis elegans Hypothetical
protein B0464.5a protein.
Length = 1003
Score = 33.1 bits (72), Expect = 0.21
Identities = 24/115 (20%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Frame = -1
Query: 682 NNNECLPEEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCLTNE 503
++ E + + D ND+ S+DS S+++ ++ +E+L S +ND + + L +E
Sbjct: 202 SDEEDVESQDDSFHVNDATEESIDSVSSIESQEAEESATEDLASCHSNDDKNEKDVLVDE 261
Query: 502 --SQRDVRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSENNLPEFIVIDLK 344
S+ D E+ S +++ + S+ S G D +++ + D++
Sbjct: 262 DTSKYDNLPVEMRSAKEGEESEGTIDSSVSSSTSSSSTGDDGDDSATSYDSEDIE 316
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 32.7 bits (71), Expect = 0.28
Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 28/209 (13%)
Frame = -1
Query: 730 YGSFGKTKVIVIENKTNNNECLPEEIDVVEDNDSGMS----SVDSNESLKNNLI----NK 575
+G+ G V V +N LPEE V+E + S S+D + +L+
Sbjct: 1624 FGNIGNVPVSVPTTAPTDNLALPEE-SVIEGSAGQSSLVSGSIDQRKVQDIDLVANDGES 1682
Query: 574 NVSENLCSTSNNDCEVKTKCLTNESQRDVRWNEIPS----CSTDFNDSNVLE----NENE 419
S N+ S++D K E R E P+ S SNV + ++++
Sbjct: 1683 RDSTNVGGVSSSDVRRKRTANDFELSEAKRLRESPNETVTSSETRQQSNVADIPELDDDD 1742
Query: 418 KTLS---NVSDGADSENNLPEFI--VIDLKCD--VNDNKLSD--DDSNVGNNESYTDPDC 266
L VSD ++N + E VIDL+ D V ++++ + DD + GN+E + D +
Sbjct: 1743 GVLGMEHEVSDEDPNDNTIQEQRPDVIDLENDEEVLEDEMDEEEDDDSFGNDEEFEDEE- 1801
Query: 265 SGIPNVDTNQSLVPI---NNEIANTENEK 188
IP D + +V + ++E AN +E+
Sbjct: 1802 -EIPEDDDDDDVVVLSDGDDEPANDNDEE 1829
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 31.5 bits (68), Expect = 0.65
Identities = 24/121 (19%), Positives = 53/121 (43%)
Frame = -1
Query: 631 SGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCLTNESQRDVRWNEIPSCSTDF 452
SG S E ++ + K+ S+ ST E K E++ D +++ + S
Sbjct: 3 SGAPPTISTEKSRSKQLRKS-SKRTASTVEGT-EAKQMRGDTENRSDGEMDDVSTSSEIR 60
Query: 451 NDSNVLENENEKTLSNVSDGADSENNLPEFIVIDLKCDVNDNKLSDDDSNVGNNESYTDP 272
+ + +EN +T ++ A +E + ++ + K + N N ++ D+N+ + +
Sbjct: 61 HGNGFIENFRSQTGNSSRTTATNERIKKKLVIKNFKANANQNDVAMGDTNIDSTDGSVGR 120
Query: 271 D 269
D
Sbjct: 121 D 121
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 31.5 bits (68), Expect = 0.65
Identities = 35/165 (21%), Positives = 79/165 (47%), Gaps = 7/165 (4%)
Frame = -1
Query: 661 EEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENL-CSTSNNDCEVKTKCLTN-ESQRDV 488
++ID+V ++ S + +++ K + + S + E + +T+ E+++
Sbjct: 1666 QDIDLVANDGESRDSTNVGGVSSSDVRRKRTANDFELSEAKRLRESPNETVTSSETRQQS 1725
Query: 487 RWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSENNLPEFIVIDLKCDVNDNKLSD-- 314
+IP +D VL E+E + + +D E P+ I ++ +V ++++ +
Sbjct: 1726 NVADIPELD---DDDGVLGMEHEVSDEDPNDNTIQEQR-PDVIDLENDEEVLEDEMDEEE 1781
Query: 313 DDSNVGNNESYTDPDCSGIPNVDTNQSLVPI---NNEIANTENEK 188
DD + GN+E + D + IP D + +V + ++E AN +E+
Sbjct: 1782 DDDSFGNDEEFEDEE--EIPEDDDDDDVVVLSDGDDEPANDNDEE 1824
>AF016428-5|ABR92601.1| 152|Caenorhabditis elegans Hypothetical
protein T05C3.6b protein.
Length = 152
Score = 31.5 bits (68), Expect = 0.65
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Frame = -1
Query: 607 NESLKNN---LINKNVSENLCSTSNNDCEVKTKCLTNESQRDVRWNEIPSCSTDFNDSNV 437
N ++ NN +IN N S N C T++N C++ E+ V IP+ T FN S
Sbjct: 34 NPNINNNGGQVIN-NYSNNYCPTTDNTCQLPPMPKCAETCEFVVCESIPAGMT-FNSSYP 91
Query: 436 LENENEKTLSNVSDGADSENNLPEFIVIDLKCDVNDNKLSDDDSNVGN 293
+ N + A E + + L D D +DD + N
Sbjct: 92 IFNSTTDCWMRLMSEAKEEILIGSYYWSLLVKDTGDGYTTDDTNTSWN 139
>AF016428-4|ABR92600.1| 504|Caenorhabditis elegans Hypothetical
protein T05C3.6a protein.
Length = 504
Score = 31.5 bits (68), Expect = 0.65
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Frame = -1
Query: 607 NESLKNN---LINKNVSENLCSTSNNDCEVKTKCLTNESQRDVRWNEIPSCSTDFNDSNV 437
N ++ NN +IN N S N C T++N C++ E+ V IP+ T FN S
Sbjct: 34 NPNINNNGGQVIN-NYSNNYCPTTDNTCQLPPMPKCAETCEFVVCESIPAGMT-FNSSYP 91
Query: 436 LENENEKTLSNVSDGADSENNLPEFIVIDLKCDVNDNKLSDDDSNVGN 293
+ N + A E + + L D D +DD + N
Sbjct: 92 IFNSTTDCWMRLMSEAKEEILIGSYYWSLLVKDTGDGYTTDDTNTSWN 139
>Z68222-9|CAE46689.1| 631|Caenorhabditis elegans Hypothetical
protein F58G6.5c protein.
Length = 631
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 1/117 (0%)
Frame = -1
Query: 535 CEVKTKCLTNESQRD-VRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSENNLPEFI 359
C KCL + R+ R + C T D+ +++E +K N D + + P++
Sbjct: 187 CRFGGKCLVVQEYRNRCRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEGSTSPQYP 246
Query: 358 VIDLKCDVNDNKLSDDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTENEK 188
+ S ++ N SY + GI + +++L+ +N + E +
Sbjct: 247 TASTPISIPSTSTSQTPTSSVN--SYNFQNIPGIVSRSFSENLIMRDNSVPVMETSQ 301
>Z68222-8|CAC70146.2| 613|Caenorhabditis elegans Hypothetical
protein F58G6.5b protein.
Length = 613
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 1/117 (0%)
Frame = -1
Query: 535 CEVKTKCLTNESQRD-VRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSENNLPEFI 359
C KCL + R+ R + C T D+ +++E +K N D + + P++
Sbjct: 169 CRFGGKCLVVQEYRNRCRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEGSTSPQYP 228
Query: 358 VIDLKCDVNDNKLSDDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTENEK 188
+ S ++ N SY + GI + +++L+ +N + E +
Sbjct: 229 TASTPISIPSTSTSQTPTSSVN--SYNFQNIPGIVSRSFSENLIMRDNSVPVMETSQ 283
>Z68217-11|CAE46673.1| 631|Caenorhabditis elegans Hypothetical
protein F58G6.5c protein.
Length = 631
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 1/117 (0%)
Frame = -1
Query: 535 CEVKTKCLTNESQRD-VRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSENNLPEFI 359
C KCL + R+ R + C T D+ +++E +K N D + + P++
Sbjct: 187 CRFGGKCLVVQEYRNRCRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEGSTSPQYP 246
Query: 358 VIDLKCDVNDNKLSDDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTENEK 188
+ S ++ N SY + GI + +++L+ +N + E +
Sbjct: 247 TASTPISIPSTSTSQTPTSSVN--SYNFQNIPGIVSRSFSENLIMRDNSVPVMETSQ 301
>Z68217-10|CAC70099.2| 613|Caenorhabditis elegans Hypothetical
protein F58G6.5b protein.
Length = 613
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 1/117 (0%)
Frame = -1
Query: 535 CEVKTKCLTNESQRD-VRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSENNLPEFI 359
C KCL + R+ R + C T D+ +++E +K N D + + P++
Sbjct: 169 CRFGGKCLVVQEYRNRCRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEGSTSPQYP 228
Query: 358 VIDLKCDVNDNKLSDDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTENEK 188
+ S ++ N SY + GI + +++L+ +N + E +
Sbjct: 229 TASTPISIPSTSTSQTPTSSVN--SYNFQNIPGIVSRSFSENLIMRDNSVPVMETSQ 283
>Z68217-4|CAA92467.2| 499|Caenorhabditis elegans Hypothetical
protein F58G6.5a protein.
Length = 499
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 1/117 (0%)
Frame = -1
Query: 535 CEVKTKCLTNESQRD-VRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSENNLPEFI 359
C KCL + R+ R + C T D+ +++E +K N D + + P++
Sbjct: 55 CRFGGKCLVVQEYRNRCRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEGSTSPQYP 114
Query: 358 VIDLKCDVNDNKLSDDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTENEK 188
+ S ++ N SY + GI + +++L+ +N + E +
Sbjct: 115 TASTPISIPSTSTSQTPTSSVN--SYNFQNIPGIVSRSFSENLIMRDNSVPVMETSQ 169
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 30.7 bits (66), Expect = 1.1
Identities = 35/169 (20%), Positives = 70/169 (41%), Gaps = 10/169 (5%)
Frame = -1
Query: 664 PEEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCLTNESQRDVR 485
P++ ++ + ND D++E K EN TS+ + T +E+ V
Sbjct: 585 PDDAEMADANDK----TDASEKQKLVEEEPTGKENEDDTSSKTAKTSTSAEKSEAPSIVD 640
Query: 484 WNEI----PSCSTDFNDSNVLEN----ENEKTLSNVSDGADSENNLPEFIVIDL--KCDV 335
N+ P+ S+ ND ++ E++ + +E E + +D + D
Sbjct: 641 SNDKIDKEPNASSTSNDETSKDDTVPMESDPPAATEKPKESTEITTEEPLEVDKAPEVDK 700
Query: 334 NDNKLSDDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTENEK 188
++ + DD + +N+ + DC I VD +Q P + + + E E+
Sbjct: 701 SEKEHEDDIMIIESNKKADEDDCVVIAVVDPDQEQTPESEKKKDGEEER 749
>AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear receptor
NHR-34 protein.
Length = 509
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 1/117 (0%)
Frame = -1
Query: 535 CEVKTKCLTNESQRD-VRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSENNLPEFI 359
C KCL + R+ R + C T D+ +++E +K N D + + P++
Sbjct: 65 CRFGGKCLVVQEYRNRCRACRLRKCFTVGMDARAVQSERDKHKKNPKDSNNEGSTSPQYP 124
Query: 358 VIDLKCDVNDNKLSDDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTENEK 188
+ S ++ N SY + GI + +++L+ +N + E +
Sbjct: 125 TASTPISIPSTSTSQTPTSSVN--SYNFQNIPGIVSRSFSENLIMRDNSVPVMETSQ 179
>U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein.
Length = 452
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 313 DDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTEN 194
++ + NN Y DC G+ N DT+ S VP +++ N N
Sbjct: 158 EEFQIKNNSLYCRSDCRGLDNPDTSAS-VPDYSKLNNNNN 196
>AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain
family protein 7 protein.
Length = 452
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 313 DDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTEN 194
++ + NN Y DC G+ N DT+ S VP +++ N N
Sbjct: 158 EEFQIKNNSLYCRSDCRGLDNPDTSAS-VPDYSKLNNNNN 196
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
protein T01D3.7 protein.
Length = 2882
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = -1
Query: 673 ECLPEEIDVVEDNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCLTNESQR 494
E +P + DN+ + +N + N +N ++SENL + CE+
Sbjct: 209 ESVPSSEIFITDNEFNQNL--ANSIITTNSVNISISENLFQDKRSTCEITYNSPAMPKIE 266
Query: 493 DVRWNEIPSCSTD 455
D+ N++ S +T+
Sbjct: 267 DLTQNKMLSGNTN 279
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical
protein T13H2.5a protein.
Length = 2471
Score = 29.1 bits (62), Expect = 3.5
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Frame = -1
Query: 451 NDSNVLENENEKTLSNVSDGADSENNLPEFIVI----DLKCDVNDNKLS--DDDSNVGNN 290
+D+N LEN+ E T E + I I + + D++D + S D D + +N
Sbjct: 311 DDTNYLENDKEGTSVAAEKEVLEEGEMDFPIEIKSSDEEQTDLDDEEESMLDSDFEISDN 370
Query: 289 ESYTDPDCSGIPNVDTNQSLVPINNEIANTENE 191
E + P CS TN+S ++ + +NE
Sbjct: 371 EDVSKPSCS-TSKKTTNRSRDSSESDNDSRDNE 402
>AF078157-11|AAG24070.1| 401|Caenorhabditis elegans Hypothetical
protein F25E5.10 protein.
Length = 401
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 412 LSNVSDGADSENNLPEFIVIDLKCDVNDNKLSDD 311
L+N +DG +NL I D++C+ ND L D
Sbjct: 97 LTNTTDGIKLRHNLKAVIEKDMECEGNDYLLPSD 130
>Z81497-7|CAB04083.3| 652|Caenorhabditis elegans Hypothetical
protein R07B7.2 protein.
Length = 652
Score = 28.3 bits (60), Expect = 6.0
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Frame = -1
Query: 694 ENKTNNNECLPEEIDVVEDNDSGMSSVDSNESLKNNLINKNV-SENLCSTSNNDCEVKTK 518
E N N+ +PEE + +E + ++VD+ + NKNV S N + N +T+
Sbjct: 456 EVNVNENQIVPEETERLEADLEIENTVDA------IIGNKNVGSVNQAVSGVNSIARETE 509
Query: 517 CLTNESQRDVRWNEIP--SCSTDFNDSNVLENENEKTLSNVSDGADS 383
+ N+ DVR NE P + + ++ EN NE + + S+ D+
Sbjct: 510 EINNQ---DVR-NETPVEDFGSIISAISITENRNESPMPSASETDDT 552
>Z75955-17|CAB00127.3| 652|Caenorhabditis elegans Hypothetical
protein R07B7.2 protein.
Length = 652
Score = 28.3 bits (60), Expect = 6.0
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Frame = -1
Query: 694 ENKTNNNECLPEEIDVVEDNDSGMSSVDSNESLKNNLINKNV-SENLCSTSNNDCEVKTK 518
E N N+ +PEE + +E + ++VD+ + NKNV S N + N +T+
Sbjct: 456 EVNVNENQIVPEETERLEADLEIENTVDA------IIGNKNVGSVNQAVSGVNSIARETE 509
Query: 517 CLTNESQRDVRWNEIP--SCSTDFNDSNVLENENEKTLSNVSDGADS 383
+ N+ DVR NE P + + ++ EN NE + + S+ D+
Sbjct: 510 EINNQ---DVR-NETPVEDFGSIISAISITENRNESPMPSASETDDT 552
>Z72502-1|CAA96585.2| 430|Caenorhabditis elegans Hypothetical
protein C08B6.2 protein.
Length = 430
Score = 28.3 bits (60), Expect = 6.0
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Frame = -1
Query: 616 VDSNESLKNNLINKNVSENLCSTSNNDCEVKTKCLTNESQRDVR--WNEIP---SCSTDF 452
V +N S++ ++ ++N C +N D V NES D++ W + S S D
Sbjct: 252 VKANASVEKEKFSEKETKNECKRTNTDSRV------NESVDDIKHEWTRLDQPISRSVDQ 305
Query: 451 NDSNVLENENEKTL----SNVSDGADSENNLPE 365
+ + N NE + SNV D N P+
Sbjct: 306 PPIDTIPNNNENEILPDTSNVQDNEIENNPKPD 338
>Z66524-7|CAA91419.2| 626|Caenorhabditis elegans Hypothetical
protein T13H5.3 protein.
Length = 626
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = -1
Query: 679 NNECLPEEID-VVEDNDSGMS--SVDSNESLKNNLINKNVSENLCSTSNNDCEVK 524
N E L ++D +VE+N G+ ++D ++ + L+N +E++C+TS K
Sbjct: 349 NAESLKHKVDYIVENNIGGVMIWAIDFDDD-QGTLLNSAAAESICTTSTKSFNYK 402
>U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical
protein C16C8.16 protein.
Length = 592
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 350 IYHNKFRKIVFTVRTVRDVRERLFVLVFEN 439
+Y K+ +VF T+RD++ R+ L+ ++
Sbjct: 526 VYGRKYNHLVFDAHTIRDLKVRIKALIMQS 555
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/79 (17%), Positives = 38/79 (48%)
Frame = -1
Query: 505 ESQRDVRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSENNLPEFIVIDLKCDVNDN 326
E++ D +++ + S + + +EN +T ++ A +E + ++ + K + N N
Sbjct: 6 ENRSDGEMDDVSTSSEIRHGNGFIENFRSQTGNSSRTTATNERIKKKLVIKNFKANANQN 65
Query: 325 KLSDDDSNVGNNESYTDPD 269
++ D+N+ + + D
Sbjct: 66 DVAMGDTNIDSTDGSVGRD 84
>U41554-1|AAA83296.2| 556|Caenorhabditis elegans Hypothetical
protein F57C12.2 protein.
Length = 556
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 640 DNDSGMSSVDSNESLKNNLINKNVSENLCSTSNNDCEVKTK 518
DN S +S V S L+NNL+N+N ++ N+ +K +
Sbjct: 5 DNPSAISQVSS---LQNNLVNQNYTQKALIQKYNEANLKVE 42
>Z82275-3|CAL44962.1| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/109 (18%), Positives = 46/109 (42%)
Frame = -1
Query: 514 LTNESQRDVRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSENNLPEFIVIDLKCDV 335
+ ++++RD WNE+ +F D V E +E+ + D+++ + F ++ D+
Sbjct: 25 IDDQAERD-GWNEVIDNVGEFEDEEVDEEVDEEEDHAEDEERDTDDEVEGFDK-EIVSDI 82
Query: 334 NDNKLSDDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTENEK 188
+D ++ D N + + +D L + I + E+
Sbjct: 83 DDEEVPQIDFGYDKNGDPQQLESPALQRIDVGIVLDELLETIEESHKER 131
>Z82265-8|CAB05169.2| 478|Caenorhabditis elegans Hypothetical
protein F02H6.2 protein.
Length = 478
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/109 (18%), Positives = 46/109 (42%)
Frame = -1
Query: 514 LTNESQRDVRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSENNLPEFIVIDLKCDV 335
+ ++++RD WNE+ +F D V E +E+ + D+++ + F ++ D+
Sbjct: 25 IDDQAERD-GWNEVIDNVGEFEDEEVDEEVDEEEDHAEDEERDTDDEVEGFDK-EIVSDI 82
Query: 334 NDNKLSDDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEIANTENEK 188
+D ++ D N + + +D L + I + E+
Sbjct: 83 DDEEVPQIDFGYDKNGDPQQLESPALQRIDVGIVLDELLETIEESHKER 131
>U55364-5|AAQ23124.1| 368|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
isoform b protein.
Length = 368
Score = 27.9 bits (59), Expect = 8.0
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Frame = -1
Query: 559 LCSTSNNDCEVKTKCLTNESQRDVRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSE 380
LC+ N T + N QRD N++ S ++ F +N + + T +G + +
Sbjct: 239 LCNAQNCGNTTNTNAIGNTPQRDAYGNQMGS-NSQFQQAN-QNGQYQNTQYQQQNGQNGQ 296
Query: 379 NNLPEFIVIDLKC---DVNDNKLSDDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEI 209
N + + ++ ++++ G+ + T+ G PN T QS NN+
Sbjct: 297 NQFQQSNGQNQNSQYQQTSNQQMNNQQYQTGDYQQ-TNTQSMGSPNTGTQQS----NNQQ 351
Query: 208 ANTE 197
N +
Sbjct: 352 MNAQ 355
>U55364-4|AAA97972.1| 382|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
isoform a protein.
Length = 382
Score = 27.9 bits (59), Expect = 8.0
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Frame = -1
Query: 559 LCSTSNNDCEVKTKCLTNESQRDVRWNEIPSCSTDFNDSNVLENENEKTLSNVSDGADSE 380
LC+ N T + N QRD N++ S ++ F +N + + T +G + +
Sbjct: 253 LCNAQNCGNTTNTNAIGNTPQRDAYGNQMGS-NSQFQQAN-QNGQYQNTQYQQQNGQNGQ 310
Query: 379 NNLPEFIVIDLKC---DVNDNKLSDDDSNVGNNESYTDPDCSGIPNVDTNQSLVPINNEI 209
N + + ++ ++++ G+ + T+ G PN T QS NN+
Sbjct: 311 NQFQQSNGQNQNSQYQQTSNQQMNNQQYQTGDYQQ-TNTQSMGSPNTGTQQS----NNQQ 365
Query: 208 ANTE 197
N +
Sbjct: 366 MNAQ 369
>U21317-2|AAA62531.3| 729|Caenorhabditis elegans Hypothetical
protein B0495.5 protein.
Length = 729
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -1
Query: 646 VEDNDSGMSSVDSNESLKN-NLINKNVSENLCSTSNNDCEVKTKCLTNESQRDVRWN 479
VED+ + S D + LKN N++ K +++ C+T++ + K +E+ +++ WN
Sbjct: 385 VEDSGNVARSSDPHGELKNKNVLRKLLTDEECATNHEISVAELKKGIDEA-KEILWN 440
>AF022970-1|AAB69895.1| 142|Caenorhabditis elegans Hypothetical
protein F13A2.1 protein.
Length = 142
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 505 ESQRDVRWNEIPSCSTDFNDSNVLENENEKT-LSNVSDGADSE 380
E ++ W + + + DF+D +EN+ EK+ L N ++ A SE
Sbjct: 62 EFRKKSLWQNLETFAMDFSDGPEMENDLEKSLLENGTETAGSE 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,730,051
Number of Sequences: 27780
Number of extensions: 233258
Number of successful extensions: 1170
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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