Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h14
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    34   0.029
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    29   1.1  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   3.3  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    27   4.4  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    27   4.4  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    27   4.4  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   4.4  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    26   7.6  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    26   7.6  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    26   7.6  
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    26   7.6  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 33.9 bits (74), Expect = 0.029
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 695 KMLANNVFSELRNFDYRAPSSILPPRPNVDSNAIL 799
           K L N VFS L  +D+   +++LP RP +D++ +L
Sbjct: 41  KSLLNEVFSALLGYDHTLWNTLLPERPTIDASFLL 75


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 714 TLLASILKVTRIVSPSTNPTSDSHHLNEQP 625
           T L++I K+T   SPS  P  DSH L++ P
Sbjct: 113 TTLSAIDKLTNDSSPSKPPHPDSHILDDDP 142


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 441 TRCPKCTLTAHTCA-PKNTRSWA 506
           TRCP+C LTA+  A P   +SWA
Sbjct: 58  TRCPQC-LTAYRIAKPPKEKSWA 79


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 707 NNVFSELRNFDYRAPSSILPPRPNVDSNAILAQWRSVRDTTTDLE 841
           NN FS+ R+FD  +P+SI PP P + ++   +       TTT+ E
Sbjct: 389 NNSFSQ-RDFD--SPNSINPPSPLMSNHESASTEHFNSTTTTEKE 430


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = +2

Query: 698 MLANNVFSELRNF-----DYR-APSSILPPRPNVDSNAILAQWRSVRDTTTDLE 841
           +L N   S+L NF     DY  A +S   P  +     +L+   SVR+T TD+E
Sbjct: 154 LLDNQPSSDLSNFNTIDADYNNASASTSAPATSASLKKVLSAEDSVRETITDIE 207


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 20/94 (21%), Positives = 39/94 (41%)
 Frame = +2

Query: 8   YNMAVLTAVDLTNASRYAIHMHRLEFISRWRTRFPHILIDYTLRPASSDDDYYVPPKLAD 187
           Y++A + + DL + +RY     +LEF   +       L  +++     D D+ V P   +
Sbjct: 353 YSLARMNSSDLFSKARYVRRAIQLEFNKNF------FLPSFSVDDPRGDIDFIVTPSFFN 406

Query: 188 RALAVKLTFSKRGCESMSCYPFHETGVVSNTTPF 289
            +  ++   S          P +  G+ S + PF
Sbjct: 407 SSQPIETPSSYSHLSDTMLVPANMAGIPSVSIPF 440


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 425 RCILVDSLSKMYFNSPYLRTEEHTIMGVDDVPAFNVRPDPDPLFPERFKGEFNEAY 592
           RCI      K Y +S     ++     VDD+P  +   + +PL P   K EF+ ++
Sbjct: 273 RCIRCLQFIKPYISSLDATEDDVDFTEVDDIPEDDELEEEEPLLPS--KEEFDASF 326


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = -2

Query: 768 GGSMLEGAL*SKLRNSLKTLLASILKVTRIVSPSTNPTSDSHHLNEQ----PPLNRF 610
           GGS+    L S    S    LA++L    + SP+ +PT      N +    PP+ RF
Sbjct: 267 GGSLHSDRLWSSFPVSYPLTLANVLAKDEVGSPTWSPTPSKSSTNLRQDGVPPILRF 323


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 732 ILITERLPAYYRHDPTWT 785
           IL  ERLP   R DP WT
Sbjct: 713 ILANERLPRSRRDDPYWT 730


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 738 SKLRNSLKTLLASILKVTRIVSPSTNPTSDSHHLN 634
           SK+RNS  T   + + +  ++SP   P   +HH N
Sbjct: 263 SKVRNSNSTKRRNFISLISMISP--RPNLSTHHFN 295


>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -2

Query: 738 SKLRN---SLKTLLASIL-KVTRIVSPSTNPTSDSHHLNEQPPLNRFL 607
           S LRN   +L+   AS+L KV    + S+  +S+S      PPL RFL
Sbjct: 321 SNLRNLGLALEKSYASLLSKVANHTAKSSEDSSNSVEFVGDPPLERFL 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,540,475
Number of Sequences: 5004
Number of extensions: 75603
Number of successful extensions: 257
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)