Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h14
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0574 - 18867623-18868033,18869751-18870209                       33   0.28 
06_02_0108 - 11917186-11917207,11917834-11917943,11918116-11918544     32   0.65 
11_01_0623 - 4998236-4999606                                           30   2.6  
02_03_0147 - 15738479-15738650,15739015-15739256                       29   3.5  
11_06_0632 + 25674807-25675477,25676472-25677861,25677948-256780...    29   6.1  
05_02_0081 + 6432957-6433289,6433367-6433882,6434283-6434570           28   8.1  

>08_02_0574 - 18867623-18868033,18869751-18870209
          Length = 289

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
 Frame = +3

Query: 444 RCPKCTLTAHTCAPKNTRSWAWTMCRLLTF-GPIPIPCFPNALKANSTKPTVDDSAEIYS 620
           RC  C    HT      R +  T+C    + G +P  C P A  A S  P     A   +
Sbjct: 38  RCDACNFDMHTFCSNLCRPFYSTLCTKAAYSGFVPSLCLPRA--AGSVTPAAIPCAGSST 95

Query: 621 TAAVRLDGGNRSSDSC 668
           TA+       R++ +C
Sbjct: 96  TASAPTSTSTRAAPAC 111


>06_02_0108 - 11917186-11917207,11917834-11917943,11918116-11918544
          Length = 186

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
 Frame = +3

Query: 357 RRPCVKAPKIKFSLPSLDTRPTTDASWWTRCPKCTLTAHTCAPKNTRSWAWT-MCRL--- 524
           R+  +K P I  S  +L +  +   +  T  P+ +L  HT A +NTR+  WT   R+   
Sbjct: 43  RKHSMKQPPIAASWQALHSADSCQTN--TPPPQISLNTHTAAVENTRTTGWTDEARISPS 100

Query: 525 -----LTFGPIPIPCFP 560
                 T GP+P P  P
Sbjct: 101 PPRTARTRGPVPAPPLP 117


>11_01_0623 - 4998236-4999606
          Length = 456

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +2

Query: 365 MREGAENKVQSAEFR--YTPDNRCILVDSLSKMYFNSPYLRT---EEHTIMGVDDVPAFN 529
           MR         AE R  ++P+   +L D   + YFN   LR    ++H I G DD PAF+
Sbjct: 61  MRRLRTRPATEAEIRRFHSPEYVDLLRDLTPESYFNDAALRQKAEDDHGIGGDDDCPAFD 120


>02_03_0147 - 15738479-15738650,15739015-15739256
          Length = 137

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 276 TRHRSCTRRPQRLEWVTRSQRATIWTGR 359
           TR R C  RP R  W     R  +WT R
Sbjct: 61  TRRRRCAVRPPRPRWHDDELRNAVWTAR 88


>11_06_0632 +
           25674807-25675477,25676472-25677861,25677948-25678083,
           25678185-25678282,25678470-25678535,25678699-25678827,
           25679570-25679746,25680576-25680614
          Length = 901

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 509 DDVPAFNVRPDPDPLFPERFKGE 577
           DD  AFN  P  DPLF   F G+
Sbjct: 299 DDSSAFNQVPKSDPLFTSEFNGD 321


>05_02_0081 + 6432957-6433289,6433367-6433882,6434283-6434570
          Length = 378

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 372 KAPKIKFSLPSLDTRPTTDASWWTRCPKCT 461
           + P+I++S+P L + PT     W R P  T
Sbjct: 315 QVPEIQWSVPELPSPPTASGLHWQRHPAAT 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,993,993
Number of Sequences: 37544
Number of extensions: 567547
Number of successful extensions: 1759
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1759
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)