Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h14
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   2.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   8.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   8.1  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 20/84 (23%), Positives = 31/84 (36%)
 Frame = +2

Query: 137 RPASSDDDYYVPPKLADRALAVKLTFSKRGCESMSCYPFHETGVVSNTTPFMYTQTSETR 316
           RPAS     YV P    + L  K  F +    + + +     G  S+ +  ++ Q  E  
Sbjct: 110 RPASPG---YVQPPTKHQKLDQKFIFPQENNYNDNYFYSKSNGSNSSNSDVLFKQNKEEE 166

Query: 317 VGYAQPACYHLDRAAAMREGAENK 388
               +    +LD      E  ENK
Sbjct: 167 QTINRKNSDYLDNQEVSMENTENK 190


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 665 VLGDTILVTFKMLANNVFSELRNFDYRAPSSI 760
           VLG   ++TF  LA+ V + L    Y   S I
Sbjct: 265 VLGTNTILTFMTLASKVENSLPKVSYIKASEI 296


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 807 HCANIALESTLGRGGSMLEGAL*SKLRNSLKTLLASILK 691
           + AN+A    L R  + L G   ++LRN+++ L  + +K
Sbjct: 654 YTANLAAFLVLERPKTKLTGINDARLRNTMENLTCATVK 692


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 489 SSVRKYGLLKYILDSESTKMHLLSGV 412
           SSV+ Y L K+ L     K HL S V
Sbjct: 582 SSVQNYSLAKHQLKEAFVKAHLGSWV 607



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -2

Query: 123 ISICGNLVR--HLEINSRRCIC 64
           +S+ G  +   H E+ +RRC+C
Sbjct: 307 LSVSGGALNDCHAEVVARRCLC 328


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 665 VLGDTILVTFKMLANNVFSELRNFDYRAPSSILPP 769
           VLG+ +  +      NV+ +L NF + A S I  P
Sbjct: 344 VLGNIMEASILSPNQNVYGDLHNFGHVAISYIHDP 378


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 130 VVDQYMRKPSAPSRNK 83
           +VD Y R PS   R K
Sbjct: 115 IVDDYQRNPSVVGRKK 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,954
Number of Sequences: 438
Number of extensions: 4840
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)