Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10h13
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 176 1e-44
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 176 1e-44
07_03_1639 + 28305801-28305958,28306240-28306249 33 0.19
03_02_0050 + 5272471-5274861 30 1.4
11_04_0443 - 17808897-17809110,17809169-17813652 30 1.8
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 29 3.1
04_04_1687 - 35365766-35366356,35367137-35368135 29 4.1
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416 29 4.1
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 29 4.1
03_01_0553 - 4123634-4123690,4123756-4124469 28 5.5
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 28 7.2
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 27 9.6
02_05_0521 - 29726985-29727605 27 9.6
02_05_0067 + 25557975-25558553 27 9.6
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 27 9.6
02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106... 27 9.6
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 176 bits (428), Expect = 1e-44
Identities = 81/132 (61%), Positives = 98/132 (74%)
Frame = -1
Query: 521 NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 342
NE+NEI+ NSRQNIRK++KDG +IKKP +HSR+R R+ EA++KGRH G+GKRRGT
Sbjct: 27 NEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTRE 86
Query: 341 ARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 162
AR+P K LW R AKKID+H+YH +YMK KGN+FKNKRVLME IH+ K
Sbjct: 87 ARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSK 146
Query: 161 AEKARTKMLSDQ 126
AEKAR K LSDQ
Sbjct: 147 AEKAREKTLSDQ 158
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = -2
Query: 598 MSSLKLQKRLAASVMRCGKKKVWLDP 521
M SLKLQKRLA+SV++CGK KVWLDP
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDP 26
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 176 bits (428), Expect = 1e-44
Identities = 81/132 (61%), Positives = 98/132 (74%)
Frame = -1
Query: 521 NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 342
NE+NEI+ NSRQNIRK++KDG +IKKP +HSR+R R+ EA++KGRH G+GKRRGT
Sbjct: 27 NEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTRE 86
Query: 341 ARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 162
AR+P K LW R AKKID+H+YH +YMK KGN+FKNKRVLME IH+ K
Sbjct: 87 ARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSK 146
Query: 161 AEKARTKMLSDQ 126
AEKAR K LSDQ
Sbjct: 147 AEKAREKTLSDQ 158
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = -2
Query: 598 MSSLKLQKRLAASVMRCGKKKVWLDP 521
M SLKLQKRLAASV++CGK KVWLDP
Sbjct: 1 MVSLKLQKRLAASVLKCGKGKVWLDP 26
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -1
Query: 227 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 126
MK KGN+ NKR + +AEKAR + LSDQ
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34
>03_02_0050 + 5272471-5274861
Length = 796
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 54 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 212
LLL L+ +CL + L +HL P LLS +P+D L H H +L H+
Sbjct: 79 LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132
>11_04_0443 - 17808897-17809110,17809169-17813652
Length = 1565
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -1
Query: 641 ILILSCVRWISPCQD 597
+LIL CVR++SPC D
Sbjct: 884 VLILKCVRYVSPCDD 898
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -1
Query: 515 INEIANTNSRQNIRKMIKDGLVIK-KPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 342
+ E N NS + + GL+ + KP+ V S RVR + K GK R TAN
Sbjct: 198 LGEANNDNSEKLEELFLDKGLLDELKPIRVESGKRVRASIRIIEKMMSSRVGKIRNTAN 256
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 450 HQETCSSPLPRPCPQKHR 397
H E C +PLP P P HR
Sbjct: 53 HAEQCPAPLPDPLPSAHR 70
>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
Length = 302
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 458 GLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 345
G+ +K+ H + + R+GRH G+G+RR +A
Sbjct: 212 GITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249
>01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/70 (20%), Positives = 35/70 (50%)
Frame = -1
Query: 602 QDEFPQAAEEACSLCYAMW*KEGVVGSNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHS 423
+D P A+E C++ +++ +G+ + + I N N Q +R + V ++
Sbjct: 1095 EDHCPDQADEECNILKSLFDAQGIHSAINHDAIMNANDDQKLRLEAEATQVAQRAAEALR 1154
Query: 422 RARVRKNTEA 393
++R+ ++ E+
Sbjct: 1155 QSRMLRSHES 1164
>03_01_0553 - 4123634-4123690,4123756-4124469
Length = 256
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +2
Query: 476 GCSVWSWCLR----SH*FHWIQPHLLFTTSHNRGCKPL 577
G S W+W S FH P LLF +H+R PL
Sbjct: 90 GDSKWTWARNLPALSRHFHVYAPDLLFFGAHSRSASPL 127
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 464 KDGLVIKKPVAVHSRARVRKNTEARRKGRHC---GFGKRRGTANAR 336
KDG ++ + +RA R +T+A R+ HC G+G RR + R
Sbjct: 174 KDGRNLQAGAQLCARAASRGHTDALRELGHCVSDGYGVRRSLSGGR 219
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -1
Query: 518 EINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFG 363
E+N + + R + KM+ D LV+ +A H + T RKGR GFG
Sbjct: 770 ELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRNDEETTSISRKGRAQGFG 822
>02_05_0521 - 29726985-29727605
Length = 206
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 488 RQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRK-GRHCGFGKRRGTANARM-PQKELW 315
R +R M++ GL + +AV A R + EARR+ R +RRG A + P W
Sbjct: 54 RAAVRGMVRGGLAPRARLAVLRAAAFRDSREARRRIRRDRRRRRRRGMMVAALSPNHAFW 113
>02_05_0067 + 25557975-25558553
Length = 192
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 191 HACS*THYPSPSCRVSGIDACQSSW 265
H C H P CR + +DA Q+ W
Sbjct: 148 HGCDKEHAYQPPCRPNVVDASQAVW 172
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -1
Query: 518 EINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFG 363
E+N + + R + KM+ D LV+ +A H + T RKGR GFG
Sbjct: 721 ELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRNDEETTSISRKGRAQGFG 773
>02_03_0297 -
17408902-17409045,17409134-17409304,17410563-17410664,
17412605-17412718,17413095-17413178,17413669-17413808,
17414429-17414560,17415430-17415618,17415736-17415801,
17415905-17415938
Length = 391
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 80 RGACVPPLLYCGGP 121
+GACV P+ YCG P
Sbjct: 152 KGACVDPVAYCGTP 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,351,843
Number of Sequences: 37544
Number of extensions: 418494
Number of successful extensions: 1219
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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