Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h13
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   171   4e-43
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.53 
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    27   8.6  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  171 bits (416), Expect = 4e-43
 Identities = 78/132 (59%), Positives = 98/132 (74%)
 Frame = -1

Query: 521 NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 342
           NE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR R R+  EARRKGRH G+GKRRGTAN
Sbjct: 27  NEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTAN 86

Query: 341 ARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 162
           ARMP+K LW              R AKK+D+HLYH LY++AKGN FKNK+ L+EYI +KK
Sbjct: 87  ARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKK 146

Query: 161 AEKARTKMLSDQ 126
            E  R K L+DQ
Sbjct: 147 TENKRAKQLADQ 158



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 18/26 (69%), Positives = 25/26 (96%)
 Frame = -2

Query: 598 MSSLKLQKRLAASVMRCGKKKVWLDP 521
           MS+L+LQKRLA++V++CGK +VWLDP
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDP 26


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 503  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 369
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 100 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPL 5
           RRHAS     +PP   NC +P+ ++T+  + L
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTRGHVSL 45


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 53  PPSWRQYVPRGACVPPL 103
           P SW QY P+G C+ P+
Sbjct: 221 PNSWHQYQPKGTCIQPV 237


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 491 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 378
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 79  RNVLPPRRRNCCRPSLEKTKPRLP 8
           R++L P+ R+C  PS++K+   LP
Sbjct: 51  RHMLTPKSRDCSEPSIDKSSEVLP 74


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +2

Query: 263 WQFCTSGAIFLEPFVFVPIVPSVAYAHWQYLFSYQSHSD-DPFYVPLCFCGHGR 421
           W +C   A+FL    F+P     A  +  Y F Y S  D D   + L F  + R
Sbjct: 126 WLYCLGLAMFLLILFFIPFFGGCADNYSFYDFDYTSECDPDDHPITLMFDEYAR 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,807,506
Number of Sequences: 27780
Number of extensions: 328249
Number of successful extensions: 867
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)