Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h13
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.62 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.62 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.9  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    23   3.3  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   4.4  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   4.4  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   4.4  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   5.8  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 70  LPPRRRNCCRPSLEKTKPR 14
           + PR++NCCR  L K   R
Sbjct: 393 MQPRKKNCCRSWLSKFPTR 411


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 70  LPPRRRNCCRPSLEKTKPR 14
           + PR++NCCR  L K   R
Sbjct: 393 MQPRKKNCCRSWLSKFPTR 411


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 336 TRIGSTSSLTKATVTT--LSTCLCVFADTGAG 425
           ++ GST + T ATVTT   +T L   + TG G
Sbjct: 206 SKAGSTDASTPATVTTTGATTTLPAASATGTG 237


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 602 QDEFPQAAEEACSLCYAMW*KEG 534
           +DEF +  +  CSLC   + ++G
Sbjct: 263 EDEFDEFGDSKCSLCQRRFEEQG 285


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 617 WISPCQDEFPQAAEEACSLCYAMW*KEGVVGSNEINEIANTNSRQNI 477
           W    Q    +  E+   +   +  ++GVV  N+I E ANT S   I
Sbjct: 40  WYQTLQTHMKKVREQMAGILSRIP-EQGVVNWNKIPEGANTTSTTKI 85


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 542 KEGVVGSNEINEIANTNSRQNI 477
           ++GVV  N+I E ANT S   I
Sbjct: 112 EQGVVNWNKIPEGANTTSTTKI 133


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 542 KEGVVGSNEINEIANTNSRQNI 477
           ++GVV  N+I E ANT S   I
Sbjct: 112 EQGVVNWNKIPEGANTTSTTKI 133


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 542 KEGVVGSNEINEIANTNSRQNI 477
           ++GVV  N+I E ANT S   I
Sbjct: 112 EQGVVNWNKIPEGANTTSTTKI 133


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 244 RCLSIFLAVLYFRSNFLRTLCLC 312
           RC+ +FL+V+   S F+  +  C
Sbjct: 6   RCIYLFLSVILITSYFVTPVMPC 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,274
Number of Sequences: 438
Number of extensions: 4339
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)