Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10h12
         (677 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ278684-2|CAB99192.1|  989|Drosophila melanogaster endonuclease...    30   2.5  
AE013599-3404|AAF46853.2| 2733|Drosophila melanogaster CG4554-PA...    30   2.5  
U42403-1|AAB02355.1| 1180|Drosophila melanogaster stripe a prote...    29   7.7  
U42402-1|AAB02354.1|  906|Drosophila melanogaster stripe b prote...    29   7.7  
AY094744-1|AAM11097.1|  790|Drosophila melanogaster GM01751p pro...    29   7.7  
AE014297-2438|AAN13756.1|  906|Drosophila melanogaster CG7847-PB...    29   7.7  
AE014297-2437|AAF55492.1| 1186|Drosophila melanogaster CG7847-PA...    29   7.7  
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    29   7.7  

>AJ278684-2|CAB99192.1|  989|Drosophila melanogaster
           endonuclease/reverse transcriptase protein.
          Length = 989

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +3

Query: 447 SCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCVRSSILAITSFV 626
           SC  +++ +  S RAVS +    +I     +SD  A A S +  ++  ++   LA   + 
Sbjct: 782 SCVSTKKTYLDSARAVSRTMALRLIRGFRTISDDAAHALSGITPIDLDIKGKYLASEGYT 841

Query: 627 SI 632
            +
Sbjct: 842 QL 843


>AE013599-3404|AAF46853.2| 2733|Drosophila melanogaster CG4554-PA
            protein.
          Length = 2733

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
 Frame = -2

Query: 616  VIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANR 437
            V+A++  + +  +   A   E N  L+  + + +VA        + CE+ +    Q+   
Sbjct: 2078 VVARMFQILKNFSTFGATRQEENAQLVRASFKAVVA------LLRKCEDYQLSNEQIEQL 2131

Query: 436  MADIAQDVI-AKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDY 260
            +  I Q++   + S+  +  +L    VG       +   RSL   +KRLG   +I SSDY
Sbjct: 2132 LLHIEQELQEGECSSQTMVFTLLKALVGR------KVDSRSLHDLMKRLGDLSIISSSDY 2185

Query: 259  V 257
            V
Sbjct: 2186 V 2186


>U42403-1|AAB02355.1| 1180|Drosophila melanogaster stripe a protein
           protein.
          Length = 1180

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 233 QSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAHEQFAQRAIKI 69
           Q +     QQ Q Q QP H   +L  +   +  + HY +     H+Q  Q+A KI
Sbjct: 657 QQQQQQQQQQQQHQQQPLHQQQQLQHQQQQQHHQQHYQQHA-IQHQQSQQQASKI 710


>U42402-1|AAB02354.1|  906|Drosophila melanogaster stripe b protein
           protein.
          Length = 906

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 233 QSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAHEQFAQRAIKI 69
           Q +     QQ Q Q QP H   +L  +   +  + HY +     H+Q  Q+A KI
Sbjct: 383 QQQQQQQQQQQQHQQQPLHQQQQLQHQQQQQHHQQHYQQHA-IQHQQSQQQASKI 436


>AY094744-1|AAM11097.1|  790|Drosophila melanogaster GM01751p
           protein.
          Length = 790

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
 Frame = -2

Query: 616 VIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANR 437
           V+ ++  + +  +   A   E N  L+  + + +VA        + CE+ +    Q+   
Sbjct: 135 VVTRMFQILKNFSTFGATRQEENAQLVRASFKAVVA------LLRKCEDYQLSNEQIEQL 188

Query: 436 MADIAQDVI-AKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDY 260
           +  I Q++   + S+  +  +L    VG       +   RSL   +KRLG   +I SSDY
Sbjct: 189 LLHIEQELQEGECSSQTMVFTLLKALVGR------KVDSRSLHDLMKRLGDLSIISSSDY 242

Query: 259 V 257
           V
Sbjct: 243 V 243


>AE014297-2438|AAN13756.1|  906|Drosophila melanogaster CG7847-PB,
           isoform B protein.
          Length = 906

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 233 QSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAHEQFAQRAIKI 69
           Q +     QQ Q Q QP H   +L  +   +  + HY +     H+Q  Q+A KI
Sbjct: 383 QQQQQQQQQQQQHQQQPLHQQQQLQHQQQQQHHQQHYQQHA-IQHQQSQQQASKI 436


>AE014297-2437|AAF55492.1| 1186|Drosophila melanogaster CG7847-PA,
           isoform A protein.
          Length = 1186

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 233 QSKGSHTAQQVQSQAQPHHVAGRLHARGANERDRLHYDRPTNCAHEQFAQRAIKI 69
           Q +     QQ Q Q QP H   +L  +   +  + HY +     H+Q  Q+A KI
Sbjct: 663 QQQQQQQQQQQQHQQQPLHQQQQLQHQQQQQHHQQHYQQHA-IQHQQSQQQASKI 716


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
            protein.
          Length = 23015

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 420  CAMSAMRLASCAVSRRAFSQSCRAV 494
            C +   + ASCAV  R + Q CR V
Sbjct: 2148 CNLPCTKTASCAVGERCYQQVCRKV 2172


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,896,561
Number of Sequences: 53049
Number of extensions: 614897
Number of successful extensions: 2589
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2582
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)